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. 2015 Sep 3;31(24):3977–3983. doi: 10.1093/bioinformatics/btv518

Table 1.

Simulation study of Example 1 with 400 true positives

Correlation AR
Block
(ρ1,ρ2) marginal P0 PC PG PGC marginal P0 PC PG PGC
(0.1, 0.1) 10.5(0.9) 10.4(0.9) 8.9(1.0) 8.9(1.0) 7.48(0.93) 7.39(0.85) 6.32(0.85) 6.28(0.85)
198.4(18.8) 385.6(9.3) 385.5(8.7) 388.2(8.8) 388.3(8.7) 261.5(18.0) 391.0(9.0) 391.2(9.1) 393.9(9.1) 393.9(9.1)
39.3(6.5) 26.4(10.7) 25.9(10.4) 23.7(5.9) 24.2(5.9) 51.4(6.4) 10.6(6.7) 10.4(6.7) 11.5(5.7) 11.1(5.5)
(0.1, 0.9) 9.88(1.92) 9.78(1.86) 9.22(1.93) 9.11(1.82) 7.38(1.37) 7.37(1.35) 6.87(1.31) 6.80(1.25)
194.5(10.4) 388.0(9.0) 388.2(8.7) 390.4(9.4) 390.1(9.3) 255.7(11.0) 391.5(8.0) 391.5(8.0) 393.3(7.8) 393.3(8.1)
38.5(6.3) 23.5(9.2) 23.1(6.7) 29.6(11.2) 27.4(10.1) 50.1(6.9) 11.0(4.8) 10.9(5.6) 14.1(6.3) 13.9(6.1)
(0.5, 0.1) 8.25(1.10) 5.98(0.68) 6.22(0.77) 5.54(0.66) 5.69(0.55) 4.70(0.33) 5.07(0.41) 4.66(0.33)
353.6(16.6) 384.2(7.7) 394.9(7.9) 393.8(7.4) 396.9(7.8) 396.9(12.4) 391.2(9.6) 397.2(8.9) 395.1(9.5) 397.3(8.8)
92.5(10.5) 6.8(3.0) 12.6(6.0) 13.6(6.9) 16.3(7.7) 95.1(9.6) 3.3(2.5) 9.8(4.9) 9.3(5.8) 9.3(4.7)
(0.5, 0.9) 8.10(1.67) 5.86(1.13) 6.78(1.33) 5.63(0.98) 5.90(0.97) 4.79(0.66) 5.21(0.77) 4.75(0.64)
353.1(11.8) 384.8(8.0) 395.1(7.9) 391.1(7.6) 396.0(7.9) 395.3(9.5) 390.2(8.0) 396.9(7.7) 394.6(8.0) 397.3(7.7)
91.8(7.9) 8.5(4.2) 13.4(6.6) 15.3(6.3) 16.0(7.0) 96.7(8.8) 3.2(2.2) 9.4(5.3) 9.9(5.6) 10.7(6.1)
(0.9, 0.1) 38.53(2.16) 7.88(0.69) 10.92(1.57) 7.67(0.61) 50.71(1.99) 6.51(0.63) 30.66(2.94) 6.54(0.62)
398.4(10.1) 147.0(10.2) 333.1(10.5) 308.0(13.4) 336.9(10.6) 398.4(10.0) 99.1(3.0) 351.4(10.3) 210.5(14.0) 350.4(10.1)
1575.5(161.1) 96.8(45.8) 48.8(20.3) 94.3(15.6) 51.2(13.4) 102.5(9.5) 4.2(14.4) 36.8(6.0) 45.5(34.6) 36.3(5.6)
(0.9, 0.9) 38.13(2.95) 8.07(0.99) 11.32(1.37) 8.00(1.01) 50.17(2.61) 6.75(1.04) 30.34(3.23) 6.78(1.10)
400.4(9.9) 148.8(10.9) 332.2(14.2) 309.5(12.7) 335.3(15.6) 400.5(9.9) 99.1(4.4) 345.8(11.0) 205.0(18.0) 345.0(10.9)
1571.9(116.4) 98.2(46.7) 49.5(19.2) 90.5(18.1) 57.5(13.7) 99.9(10.0) 6.0(15.6) 38.2(5.9) 29.8(17.9) 35.7(6.1)

In each cell, the three rows are model error, number of true positives and number of false positives. The marginal approach does not generate model errors. Mean (standard deviation).