Table 3. Sequencing parameters and results of BLASTn analysis of consensus sequence.
Conjunctival C. trachomatis genomes obtained from Temotu, Rennell and Bellona, Solomon Islands, in October-November 2013.
| Sample | Genetic component | Total paired reads | Number of paired reads mapped to reference (%) | % reference covered* | Serovar of closest NCBI BLASTn match |
|---|---|---|---|---|---|
| SB000209 | Genome | 1,948,968 | 445 (0.02) | 0.2 | F |
| Plasmid | 173 (0.01) | 15.5 | D | ||
| SB002563 | Genome | 1,838,502 | 513 (< 0.01) | 0.5 | I |
| Plasmid | 35 (< 0.01) | 12.4 | F | ||
| SB002739 | Genome | 2,530,443 | 403,672 (16.0) | 95.8 | A |
| Plasmid | 61,345 (2.4) | 99.7 | B | ||
| SB006908 | Genome | 2,594,512 | 34,663 (1.3) | 18.5 | J |
| Plasmid | 3857 (0.1) | 76.7 | D | ||
| SB006930 | Genome | 2,630,055 | 1,743,718 (66.3) | 98.9 | A |
| Plasmid | 293,102 (11.1) | 99.8 | B | ||
| SB008107 | Genome | 2,269,697 | 485,840 (21.4) | 98.0 | A |
| Plasmid | 79,314 (3.5) | 99.8 | B | ||
| SB011363 | Genome | 3,878,711 | 75,326 (1.9) | 16.3 | I |
| Plasmid | 17,375 (0.4) | 99.2 | B | ||
| SB011759 | Genome | 3,044,398 | 52,165 (1.7) | 16.3 | A |
| Plasmid | 11,707 (0.4) | 96.0 | B | ||
| SB011836 | Genome | 313 | 0 (0) | 0.0 | - |
| Plasmid | 0 (0) | 0.0 | - | ||
| SB012441 | Genome | 2,996,613 | 301,482 (10.1) | 84.5 | A |
| Plasmid | 63,827 (2.1) | 99.5 | B | ||
| SB013112 | Genome | 2,274,168 | 1,345,864 (59.2) | 98.9 | A |
| Plasmid | 332,462 (14.6) | 99.8 | B | ||
| SB013321 | Genome | 2,128,740 | 584,834 (27.5) | 98.8 | A |
| Plasmid | 127,976 (6.0) | 98.8 | B |
* At least 1× read depth