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. 2015 May 26;1(1):vev002. doi: 10.1093/ve/vev002

Figure 5.

Figure 5.

Maximum likelihood trees of Rep amino acid sequences encoded by the rep gene of representatives of EGV1 and EGV2 and sixty-nine other viruses representing the broadest breadth of currently sampled geminivirus diversity, including endogenous geminivirus sequences clearly apparent within the recently published genome sequences of L. sativa (common lettuce, GenBank accession: PRJNA68025), M. domestica (common apple tree, GenBank accession: PRJNA28845) P. trichocarpa (black cottonwood tree, GenBank accession: PRJNA17973), Fraxinus angustifolia (narrow-leafed ash, GenBank accession: AY760062), Camellia sinensis (tea plant, GenBank accession: HP764465), and Bituminaria bituminosa (Arabian pea, GenBank accession: JL856919). Branches with a filled dot have >99 per cent posterior probability support, whereas those with an empty dot have >95 per cent posterior probability support. All branches with less than 80 per cent posterior probability support have been collapsed.