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. 2015 Jun 1;1(1):vev004. doi: 10.1093/ve/vev004

Table 1.

Genetic diversity (π), dN/dS, dN, and dS values in the PepGMV and PHYVV genomic DNAs.

Virus Habitata πb
dN/dSc
dNc
dSc
DNA-A DNA-B DNA-A DNA-B DNA-A DNA-B DNA-A DNA-B
PepGMV Wild 0.025 ± 0.003 0.091 ± 0.010 0.217 ± 0.018 0.116 ± 0.008 0.017 ± 0.001 0.040 ± 0.002 0.078 ± 0.004 0.281 ± 0.009
Let-standing 0.043 ± 0.002 0.098 ± 0.010 0.168 ± 0.012 0.090 ± 0.035 0.018 ± 0.001 0.024 ± 0.002 0.107 ± 0.006 0.270 ± 0.009
Cultivated 0.068 ± 0.002 0.105 ± 0.008 0.157 ± 0.012 0.112 ± 0.005 0.022 ± 0.001 0.033 ± 0.002 0.140 ± 0.006 0.349 ± 0.013
Alld 0.049 ± 0.003 0.097 ± 0.009 0.167 ± 0.004 0.109 ± 0.002 0.021 ± 0.001 0.034 ± 0.001 0.124 ± 0.002 0.316 ± 0.004
PHYVV Wild 0.059 ± 0.005 0.121 ± 0.006 0.139 ± 0.016 0.107 ± 0.008 0.022 ± 0.001 0.037 ± 0.001 0.159 ± 0.005 0.346 ± 0.011
Let-standing 0.057 ± 0.004 0.124 ± 0.006 0.129 ± 0.051 0.115 ± 0.005 0.021 ± 0.001 0.039 ± 0.002 0.139 ± 0.012 0.344 ± 0.017
Cultivated 0.053 ± 0.006 0.129 ± 0.007 0.141 ± 0.008 0.111 ± 0.003 0.020 ± 0.001 0.040 ± 0.002 0.159 ± 0.009 0.363 ± 0.019
Alld 0.053 ± 0.004 0.125 ± 0.006 0.135 ± 0.005 0.113 ± 0.002 0.021 ± 0.001 0.039 ± 0.001 0.157 ± 0.002 0.349 ± 0.005

aLevel of anthropization (wild; let-standing; cultivated; ALL: wild + let-standing + cultivated).

bValues are mean ± standard errors based in 1,000 replicates bootstrap.

cValues are mean ± standard error based on pairwise determination of dN/dS, dN, and dS.

dValues are mean ± standard error based on values for the four genes of DNA-A concatenated, and on the two genes of DNA-B.