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. 2015 Oct 2;1(1):vev012. doi: 10.1093/ve/vev012

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© The Author 2015. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 7. — Minimum free energy of permuted FMDV sequences. (A) RNA structure in permuted sequences. Distribution of minimum free energy values (x axis) of 1,000 permuted sequences generated from each of the four permutation scripts, indicated in top left of each panel. Values for permuted sequences are shown in green. Purple dashed line is the value for the wild-type FMDV capsid sequence (Genbank KF152935.1). (B) Sliding window analysis, 100 nucleotides with eighty nucleotide overlap, of local RNA structure in the FMDV capsid sequence for the wild type (left), and one of the permuted sequences (right).