| Population databases |
|
| HapMap |
http://hapmap.ncbi.nlm.nih.gov/ |
| 1000 Genomes Project |
http://www.1000genomes.org |
| ENCODE project |
http://genome.ucsc.edu/ENCODE |
| NHGRI GWAS catalogue |
www.genome.gov/gwastudies |
| dbGaP |
http://www.ncbi.nlm.nih.gov/gap |
| Exome Variant Server |
http://evs.gs.washington.edu/EVS/ |
| Genevar |
http://www.sanger.ac.uk/resources/software/genevar/ |
| ClinVar |
http://www.ncbi.nlm.nih.gov/clinvar/ |
| dbSNP |
http://www.ncbi.nlm.nih.gov/snp |
| dbVar |
http://www.ncbi.nlm.nih.gov/dbvar |
| OMIM |
http://www.omim.org |
| RefSeqGene |
http://www.ncbi.nlm.nih.gov/refseq/rsg |
| MitoMap |
http://www.mitomap.org/MITOMAP/HumanMitoSeq |
| SNPedia |
http://www.snpedia.com |
| IGV for iPad |
http://www.broadinstitute.org/igv/iPadLaunch |
| PhenX |
https://www.phenxtoolkit.org |
| Genome/Epigenome browsers |
|
| UCSC Genome Browser |
http://genome.ucsc.edu/ |
| WashU Epigenome Browser |
http://epigenomegateway.wustl.edu/ |
| The Ensembl Genome Browser |
http://www.ensembl.org/index.html |
| VEGA Genome Browser |
http://vega.sanger.ac.uk/index.html |
| Blood eQTL browser |
http://genenetwork.nl/bloodeqtlbrowser/ |
| Functional genomics/Gene expression |
|
| HaploReg |
http://www.broadinstitute.org/haploreg |
| RegulomeDB |
http://regulome.stanford.edu |
| FunSeq2 |
http://funseq2.gersteinlab.org/ |
| GWAS3D |
http://jjwanglab.org/gwas3d |
| Gene Ontology |
www.geneontology.org |
| GATK |
https://www.broadinstitute.org/gatk/ |
| miRWalk |
http://zmf.umm.uni-heidelberg.de |
| Sherlock |
http://sherlock.ucsf.edu/submit.html |
| UniProt |
www.uniprot.org |
| GEO |
http://www.ncbi.nlm.nih.gov/geo |
| ArrayExpress |
http://www.ebi.ac.uk/microarray-as/ae/ |
| Microbiome |
http://www.hmpdacc.org/ |
| Metabolome |
http://www.hmdb.ca/ |
| Human Gene Mutation Database |
http://www.hgmd.org |
| In silico functional predictive tools |
|
| PFAM |
http://pfam.sanger.ac.uk |
| PolyPhen-2 |
http://genetics.bwh.harvard.edu/pph2/ |
| SIFT |
http://sift.jcvi.org |
| SIFT BLink |
http://sift.jcvi.org/www/SIFT_BLink_submit.html |
| SMART |
http://smart.embl.de |
| SNPeffect |
http://snpeffect.switchlab.org |
| Single-gene/variant browser |
|
| AncestrySNPminer |
www.cchmc.org/mershalab/AncestrySNPminer |
| SPSmart |
http://spsmart.cesga.es/hapmap.php?dataSet=hapmap |
| PupaSuite |
http://pupasuite.bioinfo.cipf.es |
| SNPper |
http://snpper.chip.org/bio/snpper-enter |
| GVS |
http://gvs.gs.washington.edu/GVS |
| SNAP |
https://www.broadinstitute.org/mpg/snap/ldsearchpw.php |
