Table 2. LD for GWAS significant SNPs with functional proxies.
| GWAS significant SNP | Functional Proxy SNPs# | r2 threshold | RegulomeDB Score* |
|---|---|---|---|
| MYO1D/rs17183295 | rs10512441 | 0.9 | 1a |
| rs17183628 | 0.9 | 1d | |
| rs17781142 | 0.9 | 1f | |
| TJP2/rs11145746 | rs1538583 | 1.0 | 1b |
| rs11145326 | 0.8 | 1f | |
| rs11145488 | 1.0 | 1f | |
| BLOC1S1 & RDH5/rs3138142 | rs3138142 | 1.0 | 1d |
| BLOC1S1 & RDH5/rs3138144 | rs3138144 | 1.0 | 1f |
| C4BPAP2/CD55/rs1652333 | rs1652333 | 1.0 | 1f |
| rs2802236 | 1.0 | 1b | |
| rs2564974 | 1.0 | 1b | |
| rs2564978 | 1.0 | 1b | |
| rs12095015 | 1.0 | 1d | |
| rs6700168 | 1.0 | 1d | |
| rs1346720 | 0.8 | 1f | |
| rs7545125 | 1.0 | 1f | |
| rs1572275 | 1.0 | 1f | |
| rs4844592 | 1.0 | 1f | |
| rs10864231 | 1.0 | 1f | |
| rs1507758 | 1.0 | 1f | |
| rs1507760 | 1.0 | 1f | |
| CNDP2/rs12971120 | rs12971120 | 1.0 | 1f |
| rs8084410 | 0.9 | 1b | |
| rs11151960 | 0.8 | 1d | |
| rs747176 | 0.8 | 1f | |
| rs3764509 | 0.9 | 1f | |
| rs12605820 | 0.8 | 1f | |
| rs2303463 | 0.8 | 1f | |
| rs4891557 | 0.8 | 1f | |
| rs4891559 | 0.9 | 1f | |
| rs3829640 | 1.0 | 1f | |
| rs2278161 | 1.0 | 1f | |
| rs2278159 | 0.8 | 1f | |
| rs2278158 | 0.8 | 1f | |
| rs734559 | 1.0 | 1f | |
| rs3794950 | 0.8 | 1f |
#GWAS significant SNPs with regulatory potential are bolded, *RegulomeDB score are confined to the range 1a–f.