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. Author manuscript; available in PMC: 2016 Sep 8.
Published in final edited form as: Clin Cancer Res. 2015 Feb 18;21(11):2644–2651. doi: 10.1158/1078-0432.CCR-14-2391

Table 1.

List of divergent mutations between primary and metastatic tumors indicating possible clonal evolution. Novel mutations between tumor pairs are highlighted in bold.

Site of novel mutations Primary site Mutations in primary Mutations in metastasis
Metastasis Breast PIK3CA:c.1633G>A p.E545K PIK3CA:c.1633G>A p.E545K
TP53:c.853G>A p.E285K
Breast PTEN:c.733C>T p.Q245*
Breast HRAS:c.34G>A p.G12S HRAS:c.34G>Ap.G12S
SMAD4:c.1553T>C p.I518T
Breast PIK3CA:c.1633G>A p.E545K PIK3CA:c.1633G>A p.E545K
PTPN11:c.173A>G p.N58S
Breast TP53:c.839G>T p.R280I
Breast KRAS:c.34G>C p.G12R
Breast KRAS:c.35G>T p.G12V
Breast PIK3CA:c.278G>C p.R93P
Colon PIK3CA:c.1624G>A p.E542K
KRAS:c.35G>T p.G12V
PIK3CA:c.1624G>A p.E542K
KRAS:c.35G>T p.G12V
SMAD4:c.1081C>A p.R361S
Colon PIK3CA:c.1624G>A p.E542K
Colon APC:c.3340C>T p.R1114*
TP53:c.742C>T p.R248W
PIK3CA:c.3140A>Gp.H1047R
KRAS:c.436G>A p.A146T
APC:c.3340C>T p.R1114*
TP53:c.742C>T p.R248W
PIK3CA:c.3140A>G p.H1047R
KRAS:c.436G>A p.A146T
PIK3CA:c.1030G>A p.V344M
APC:c.4348C>T p.R1450*
Colon TP53:c.818G>A p.R273H
KRAS:c.38G>A p.G13D
TP53:c.818G>A p.R273H
KRAS:c.38G>A p.G13D
PIK3CA:c.1638G>T p.Q546H
Colon KRAS:c.35G>A p.G12D KRAS:c.35G>A p.G12D
TP53:c.844C>T p.R282W
PIK3CA:c.1633G>A p.E545K
Colon TP53:c.809T>C p.F270S TP53:c.809T>C p.F270S
NRAS:c.183A>C p.Q61H
Gastric APC:c.4396G>T p.G1466*
Lung FBXW7:c.1436G>A p.R479Q
Melanoma CDKN2A:c.158_159delp.M53fs
NRAS:c.181C>A p.Q61K
CDKN2A:c.158_159del p.M53fs
NRAS:c.181C>A p.Q61K
CTNNB1:c.133T>C p.S45P
Renal cell TP53:c.742C>T p.R248W
Renal cell TP53:c.581T>G p.L194R
Sarcoma FBXW7:c.1698G>A p.W566*
Primary Breast TP53:c.602T>A p.L201*
Breast TP53:c.526T>Ap.C176S
TP53:c.581T>G p.L194R
TP53:c.526T>A p.C176S
Breast PIK3CA:c.1624G>A p.E542K
Breast TP53:c.722C>A p.S241Y
ABL1:c.844G>C p.E282Q
PIK3CA:c.1633G>A p.E545K
PTEN:c.511C>T p.Q171*
TP53:c.722C>A p.S241Y
ABL1:c.844G>C p.E282Q
PIK3CA:c.1633G>A p.E545K
Colon KRAS:c.35G>A p.G12D
FBXW7:c.1375G>A p.G459R
APC:c.2626C>T p.R876*
KRAS:c.35G>A p.G12D
FBXW7:c.1375G>A p.G459R
Colon APC:c.4495G>T p.G1499*
NRAS:c.35G>T p.G12V
PIK3CA:c.1637A>G p.Q546R
TP53:c.581T>A p.L194H
APC:c.4495G>T p.G1499*
NRAS:c.35G>T p.G12V
PIK3CA:c.1637A>G p.Q546R
Colon APC:c.3883G>T p.E1295*
TP53:c.817C>T p.R273C
SMAD4:c.1082G>A p.R361H
APC:c.3883G>T p.E1295*
TP53:c.817C>T p.R273C
Colon TP53:c.527G>A p.C176Y
KRAS:c.38G>A p.G13D
SMAD4:c.1529G>T p.G510V
TP53:c.527G>A p.C176Y
KRAS:c.38G>A p.G13D
Melanoma MLH1:c.1151T>A p.V384D
NRAS:c.182A>G p.Q61R
KIT:c.1621A>C p.M541L
MLH1:c.1151T>A p.V384D
NRAS:c.182A>G p.Q61R
Melanoma BRAF:c.1406G>A p.G469E
KRAS:c.40G>A p.V14I
BRAF:c.1406G>A p.G469E
Sarcoma TP53:c.535C>A p.H179N
Thyroid BRAF:c.1799T>A p.V600E
AKT1:c.49G>A p.E17K
BRAF:c.1799T>A p.V600E
Both Small intestine TP53:c.856G>A p.E286K
ERBB2:c.2524G>A p.V842I
TP53:c.856G>A p.E286K
ERBB4:c.2817G>T p.L939F
SMAD4:c.380G>T p.C127F
KRAS:c.35G>A p.G12D
Breast TP53:c.626_627del p.R209fs TP53:c.524G>A p.R175H
Colon KRAS:c.35G>T p.G12V
TP53:c.273G>A p.W91*
KRAS:c.35G>T p.G12V
TP53:c.725G>A p.C242Y
PIK3CA:c.3140A>G p.H1047R
Colon PIK3CA:c.263G>A p.R88Q
KRAS:c.38G>A p.G13D
PIK3CA:c.263G>A p.R88Q
GNAS:c.602G>A p.R201H
Colon APC:c.3927_3931delp.E1309fs
KRAS:c.35G>T p.G12V
APC:c.3927_3931delp.E1309fs
PIK3CA:c.263G>A p.R88Q
Sarcoma TP53:c.818G>A p.R273H
CSF1R:c.950A>G p.E317G
TP53:c.844C>T p.R282W
TP53:c.871A>G p.K291E
CSF1R:c.923A>G p.N308S