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. 2016 Jun 24;6(9):2725–2744. doi: 10.1534/g3.116.032359

Table 7. Wheat data.

Method Environment–trait Correlation MSEP
Mean SE Ranka Mean SE Rank
Bed2I-DTHD 0.93 0.03 2 4.82 1.60 2
Bed2I-GNVI 0.79 0.08 1.5 6.8E-05 0.00 2
Bed2I-GRYLD 0.64 0.12 1 0.05 0.01 1
Bed2I-PTHT 0.60 0.18 1 26.55 11.90 2
Bed5I-DTHD 0.76 0.13 2 17.61 7.63 1
U Bed5I-GNVI 0.60 0.20 1 9.7E-05 0.00 2
Bed5I-GRYLD 0.35 0.32 2 0.23 0.09 2
Bed5I-PTHT 0.46 0.16 3 11.90 3.40 3
Drip-DTHD 0.95 0.02 1 2.66 0.81 1
Drip-GNVI 0.68 0.21 1.5 0.00 0.00 2
Drip-GRYLD 0.67 0.17 1 0.13 0.05 1
Drip-PTHT 0.69 0.08 1 22.68 10.21 1
Ave 0.68 0.14 1.50 7.22 2.98 1.67
Bed2I-DTHD 0.95 0.01 1 4.44 0.57 1
Bed2I-GNVI 0.79 0.01 1.5 6.3E-05 0.00 2
Bed2I-GRYLD 0.60 0.04 2 0.06 0.00 2
Bed2I-PTHT 0.56 0.06 2 28.24 3.70 2
Bed5I-DTHD 0.79 0.04 1 16.51 2.37 1
D Bed5I-GNVI 0.66 0.06 2 8.4E-05 0.00 2
Bed5I-GRYLD 0.38 0.09 1 0.22 0.02 1
Bed5I-PTHT 0.47 0.06 2 11.86 1.10 2
Drip-DTHD 0.94 0.01 2 4.34 0.53 2
Drip-GNVI 0.68 0.06 1.5 0.00 0.00 2
Drip-GRYLD 0.59 0.06 3 0.14 0.02 2
Drip-PTHT 0.62 0.03 2 23.83 3.14 2
Ave 0.67 0.04 1.75 7.47 0.95 1.75
Bed2I-DTHD 0.94 0.05 3 17.37 6.94 3
Bed2I-GNVI 0.33 0.21 3 0.00 0.00 2
Bed2I-GRYLD 0.58 0.18 3 0.07 0.01 3
Bed2I-PTHT 0.56 0.23 3 32.70 14.42 3
Bed5I-DTHD 0.78 0.14 3 30.94 8.83 3
S Bed5I-GNVI 0.46 0.25 3 0.00 0.00 2
Bed5I-GRYLD 0.38 0.33 3 0.24 0.09 3
Bed5I-PTHT 0.41 0.18 1 9.88 3.18 1
Drip-DTHD 0.93 0.05 3 7.27 2.56 3
Drip-GNVI 0.43 0.14 3 0.00 0.00 2
Drip-GRYLD 0.55 0.18 2 0.17 0.08 3
Drip-PTHT 0.61 0.16 3 28.84 12.68 3
Ave 0.58 0.17 2.75 10.62 4.07 2.58

Mean and SE of the estimated correlations and MSPE from the 10-fold cross-validation CV1. The BMTME model was fitted using unstructured (U), diagonal (D), and standard (S) variance–covariance matrices. Environment (Bed2I, Bed5I, Drip)–trait [days to heading (DTHD), GNDVI, grain yield (GRYLD), and plant height (PTHT)] combination. Method stands for the three variance–covariance matrices used with the BMTME.

a

Since three BMTME models are fitted (unstructured, diagonal, and standard), the values of the ranks ranged from 1 to 3, and the lower the values, the better the prediction accuracy. For ties, we assigned the average of the ranks that would have been assigned had there been no ties.