Table 3. Details of the Colletotrichum isolates used in this study, including the hosts, locations and GenBank accession numbers of the generated sequences.
| Species | Strain no. | Host | Location | GenBank accession number |
||||
|---|---|---|---|---|---|---|---|---|
| ITS | TUB2 | ACT | GPDH | CAL | ||||
| Colletotrichum acutatum | BRIP 28519 | Carica papaya | Australia | FJ 972601 | FJ 907443 | FJ 907428 | FJ 972580 | FJ 917510 |
| C. acutatum | CBS 29467 | Carica papaya | Australia | FJ 972610 | FJ 907444 | FJ 907429 | FJ 972581 | FJ 917511 |
| C. boninense | CBS 128547 | Camellia sp. | New Zealand | JQ005159 | JQ005593 | JQ005507 | JQ005246 | JQ005680 |
| C. boninense | CBS 123755 | Crinum asiaticum | Japan | JQ005153 | JQ005588 | JQ005501 | JQ005240 | JQ005674 |
| C. brevisporum | BCC 38876* | Neoregelia sp. | Thailand | JN050238 | JN050244 | JN050216 | JN050227 | JN050222 |
| C. brevisporum | MFLUCC100182 | Pandanus pygmaeus | Thailand | JN050239 | JN050245 | JN050217 | JN050228 | — |
| C. brevisporum | LJTJ24 | Capsicumsp. | China | KP748215 | — | KP823736 | KP823794 | — |
| C. brevisporum | LJTJ27 | Capsicumsp. | China | KP748218 | — | KP823737 | KP823797 | — |
| C. brevisporum | LJTJ54 | Capsicumsp. | China | KP943578 | — | KP943568 | KP943511 | — |
| C. brevisporum | LJTJ59 | Capsicumsp. | China | KP943579 | — | KP943569 | KP943513 | — |
| C. brevisporum | LJTJ67 | Capsicum sp. | China | KP943580 | — | KP943570 | KP943512 | — |
| C. brevisporum | LJTJ79 | Capsicumsp. | China | KP943581 | — | KP943571 | KP943510 | — |
| C. cliviae | CBS 125375* | Clivia miniata | China | JX519223 | JX519249 | JX519240 | JX546611 | — |
| C. cliviae | CSSK4 | Clivia miniata | China | GQ485607 | GQ849440 | GQ856777 | GQ856756 | GQ849464 |
| C. cliviae | CSSS1 | Clivia miniata | China | GU109479 | GU085869 | GU085861 | GU085868 | GU085864 |
| C. coccodes | CBS 164.49 | Solanum tuberosum | Netherlands | HM171678 | — | HM171666 | HM171672 | HM171669 |
| C. coccodes | CBS 369.75* | Solanum tuberosum | Netherlands | HM171679 | — | HM171667 | HM171673 | HM171670 |
| C. coccodes | CPOS1 | Solanum tuberosum | China | GQ485588 | GQ849444 | GQ856787 | GQ856744 | HM171670 |
| C. dematium | CBS 125.25* | Eryngium campestre, dead leaf | France | GU227819 | GU228113 | GU227917 | GU228211 | — |
| C. dematium | CBS 125340 | Apiaceae, dead stem | Czech Rep | GU227820 | GU228114 | GU227918 | GU228212 | — |
| C. fructicola | ICMP 18581*, CBS 130416 | Coffea arabica | Thailand | JX010165 | JX010405 | FJ907426 | JX010033 | FJ917508 |
| C. fructicola | MFLUCC090228* | Coffea arabica | Thailand | FJ972603 | FJ907441 | FJ907426 | FJ972578 | FJ917508 |
| C. fructicola | CBS 125397*, ICMP 18646 | Tetragastris panamensis | Panama | JX010173 | JX010409 | JX009581 | JX010032 | JX009674 |
| C. fructicola | CBS 238.49, ICMP 17921 | Ficus habrophylla | Germany | JX010181 | JX010400 | JX009495 | JX009923 | JX009671 |
| C. fructicola | LJTJ2 | Capsicumsp. | China | KP748192 | KP823854 | KP823742 | KP823772 | KP823812 |
| C. fructicola | LJTJ10 | Capsicumsp. | China | KP748201 | KP823855 | KP823743 | KP823780 | KP823813 |
| C. fructicola | LJTJ18 | Capsicumsp. | China | KP748209 | KP823856 | KP823744 | KP823788 | KP823814 |
| C. fructicola | LJTJ20 | Capsicumsp. | China | KP748211 | KP823857 | KP823745 | KP823790 | KP823815 |
| C. fructicola | LJTJ21 | Capsicumsp. | China | KP748212 | KP823858 | KP823746 | KP823791 | KP823816 |
| C. fructicola | LJTJ25 | Capsicumsp. | China | KP748216 | KP823859 | KP823747 | KP823795 | KP823817 |
| C. fructicola | LJTJ28 | Capsicumsp. | China | KP748219 | KP823860 | KP823748 | KP823798 | KP823818 |
| C. fructicola | LJTJ33 | Capsicumsp. | China | KP748224 | KP823861 | KP823749 | KP823803 | KP823819 |
| C. fructicola | LJTJ34 | Capsicumsp. | China | KP748225 | KP823862 | KP823750 | KP823804 | KP823820 |
| C. gloeosporioides | CBS 95397 | Citrus sinensis | Italy | FJ972609 | FJ907445 | FJ 907430 | FJ 972582 | FJ 917512 |
| C. gloeosporioides | CBS 953.97* | Citrus sinensis | Italy | GQ485605 | GQ849434 | GQ856782 | GQ856762 | GQ849452 |
| C. gloeosporioides | IMI 356878* | Citrus sinensis | Italy | JX010152 | JX010445 | JX009531 | JX010056 | JX009731 |
| C. gloeosporioides | CORCG5 | Vanda sp. | China | HM034809 | HM034811 | HM034801 | HM034807 | HM034803 |
| C. gloeosporioides | LJTJ13 | Capsicumsp. | China | KP748204 | KP823863 | KP823751 | KP823783 | KP823821 |
| C. gloeosporioides | LJTJ14 | Capsicumsp. | China | KP748205 | KP823864 | KP823752 | KP823784 | KP823822 |
| C. gloeosporioides | LJTJ15 | Capsicumsp. | China | KP748206 | KP823865 | KP823753 | KP823785 | KP823823 |
| C. gloeosporioides | LJTJ17 | Capsicumsp. | China | KP748208 | KP823866 | KP823754 | KP823787 | KP823824 |
| C. gloeosporioides | LJTJ87 | Capsicumsp. | China | KT936448 | — | KT936437 | KP943544 | KT936431 |
| C. scovillei | CBS 126529* | Capsicum sp. | Indonesia | JQ948267 | JQ949918 | JQ949588 | JQ948597 | — |
| C. scovillei | CBS 126530 | Capsicum sp. | Indonesia | JQ948268 | JQ949919 | JQ949589 | JQ948598 | — |
| C. scovillei | LJTJ35 | Capsicumsp. | China | KP748226 | KP823849 | KP823735 | KP823805 | KP823807 |
| C. scovillei | LJTJ42 | Capsicumsp. | China | KP943572 | KP943588 | KP943562 | KP943516 | KP943582 |
| C. scovillei | LJTJ61 | Capsicumsp. | China | KP943573 | KP943589 | KP943563 | KP943517 | KP943583 |
| C. scovillei | LJTJ70 | Capsicumsp. | China | KP943574 | KP943590 | KP943564 | KP943515 | KP943584 |
| C. scovillei | LJTJ72 | Capsicumsp. | China | KP943575 | KP943591 | KP943565 | KP943514 | KP943585 |
| C. scovillei | LJTJ84 | Capsicumsp. | China | KP943576 | KP943592 | KP943566 | KP943518 | KP943586 |
| C. scovillei | LJTJ85 | Capsicumsp. | China | KP943577 | KP943593 | KP943567 | KP943519 | KP943587 |
| C. siamense | ICMP 17795 | Malus x domestica | USA | JX010162 | JX010393 | JX009506 | JX010051 | JX009703 |
| C. siamense | ICMP 18578*, CBS 130417 | Coffea arabica | Thailand | JX010171 | JX010404 | FJ907423 | JX009924 | FJ917505 |
| C. siamense | LJTJ4 | Capsicumsp. | China | KP748194 | KP823867 | KP823755 | KP823774 | — |
| C. siamense | LJTJ5 | Capsicumsp. | China | KP748195 | KP823868 | KP823756 | KP823775 | KP823825 |
| C. siamense | LJTJ7 | Capsicumsp. | China | KP748198 | KP823869 | KP823757 | KP823777 | KP823826 |
| C. siamense | LJTJ8 | Capsicumsp. | China | KP748199 | KP823870 | KP823758 | KP823778 | KP823827 |
| C. siamense | LTTJ11 | Capsicumsp. | China | KP748202 | KP823871 | KP823759 | KP823781 | KP823828 |
| C. siamense | LJTJ23 | Capsicumsp. | China | KP748214 | KP823872 | KP823760 | KP823793 | KP823829 |
| C. siamense | LJTJ36 | Capsicumsp. | China | KT936443 | KT936438 | KT936432 | KP943522 | — |
| C. siamense | LJTJ48 | Capsicumsp. | China | KP748227 | KP823873 | KP823761 | KP823806 | KP823830 |
| C. siamense | LTTJ51 | Capsicumsp. | China | KT936444 | KT936439 | KT936433 | KP943532 | KT936427 |
| C. siamense | LJTJ73 | Capsicumsp. | China | KT936445 | KT936440 | KT936434 | KP943537 | KT936428 |
| C. siamense | LJTJ76 | Capsicumsp. | China | KT936446 | KT936441 | KT936435 | KP943538 | KT936429 |
| C. sichuanensis | LJTJ3 | Capsicumsp. | China | KP748193 | KP823850 | KP823738 | KP823773 | KP823808 |
| C. sichuanensis | LJTJ16 | Capsicumsp. | China | KP748207 | KP823851 | KP823739 | KP823786 | KP823809 |
| C. sichuanensis | LJTJ22 | Capsicumsp. | China | KP748213 | KP823852 | KP823740 | KP823792 | KP823810 |
| C. sichuanensis | LJTJ30 | Capsicumsp. | China | KP748221 | KP823853 | KP823741 | KP823800 | KP823811 |
| C. simmondsii | CBS 122122* | Carica papaya, fruit | Australia | JQ948276 | JQ949927 | JQ949597 | JQ948606 | — |
| C. simmondsii | BRIP 28519* | Carica papaya, fruit | Australia | GQ485606 | GQ856784 | GQ849430 | GQ856763 | GQ849454 |
| C. truncatum | CBS 151.35* | Phaseolus lunatus | USA | GU227862 | GU228156 | GU227960 | GU228254 | — |
| C. truncatum | CBP002 | Brassica parachinensis Bailey | China | KF030677 | KF240819 | KF158412 | KF300886 | KF114851 |
| C. truncatum | CSSX9 | Hymenocallis americana | China | GQ485594 | GQ849436 | GQ856772 | GQ856752 | GQ849461 |
| C. truncatum | CBS 119189 | Phaseolus lunatus | USA | GU227863 | GU228157 | GU227961 | GU228255 | — |
| C. truncatum | IMI 135524 | Clitoria ternatea | Sudan | GU227874 | GU228168 | GU227972 | GU228266 | — |
| C. truncatum | CBS 120709 | Capsicum frutescens | India | GQ485593 | GQ849429 | GQ856783 | GQ856753 | GQ849453 |
| C. truncatum | LJTJ1 | Capsicumsp. | China | KP748196 | KP823840 | KP823762 | KP823771 | KP823831 |
| C. truncatum | LJTJ6 | Capsicumsp. | China | KP748197 | KP823841 | KP823763 | KP823776 | KP823832 |
| C. truncatum | LJTJ9 | Capsicumsp. | China | KP748200 | KP823842 | KP823764 | KP823779 | KP823833 |
| C. truncatum | LJTJ12 | Capsicumsp. | China | KP748203 | KP823843 | KP823765 | KP823782 | KP823834 |
| C. truncatum | LJTJ19 | Capsicumsp. | China | KP748210 | KP823844 | KP823766 | KP823789 | KP823835 |
| C. truncatum | LJTJ26 | Capsicumsp. | China | KP748217 | KP823845 | KP823767 | KP823796 | KP823836 |
| C. truncatum | LJTJ29 | Capsicumsp. | China | KP748220 | KP823846 | KP823768 | KP823799 | KP823837 |
| C. truncatum | LJTJ31 | Capsicumsp. | China | KP748222 | KP823847 | KP823769 | KP823801 | KP823838 |
| C. truncatum | LJTJ32 | Capsicumsp. | China | KP748223 | KP823848 | KP823770 | KP823802 | KP823839 |
| C. truncatum | LJTJ86 | Capsicumsp. | China | KT936447 | KT936442 | KT936436 | KP943521 | KT936430 |
| Monilochaetes infuscans | CBS 869.96 | Unknown | Unknown | JQ005780 | JQ005864 | JQ005843 | — | — |
ITS: rDNA-ITS region; TUB 2: ß-tubulin; ACT: actin; GPDH: glyceraldehyde-3-phosphate dehydrogenase; and CAL: calmodulin. The isolates from this study are indicated in bold letters.
*Ex-type cultures.