Table 1.
Rates of [35S]-fMet release mediated by E. coli RF1 and RF2 from E. coli 70S ribosomes programmed with canonical or pseudouridylated stop codons.
Stop codon | ||||||
---|---|---|---|---|---|---|
UAA | UAG | ΨAA | ΨAG | AAA | no mRNA | |
| ||||||
kobs, s−1 | ||||||
10 nM RF1 | 0.031 ± 0.004 | 0.039 ± 0.005 | 0.032 ± 0.005 | 0.028 ± 0.004 | (1.7 ± 0.2) ·10−5 | (9.1 ± 1.0)·10−6 |
30 nM RF1 | 0.045 ± 0.004 | not measured | 0.044 ± 0.005 | not measured | (2.8 ± 0.3)·10−5 | (1.7 ± 0.3)·10−5 |
100 nM RF1 | 0.058 ± 0.008 | 0.046 ± 0.005 | 0.052 ± 0.006 | 0.048 ± 0.005 | (7.9 ± 0.6)·10−5 | (2.5 ± 0.2)·10−5 |
500 nM RF1 | 0.055 ± 0.006 | 0.059 ± 0.006 | 0.066 ± 0.008 | 0.059 ± 0.006 | (1.8 ± 0.1)·10−4 | (4.2 ± 0.1)·10−5 |
10 nM RF2 | (5.5 ± 0.8)·10−4 | not measured | (5.7 ± 1.0)·10−4 | not measured | not measured | not measured |
25 nM RF2 | (4.9 ± 1.0)·10−4 | not measured | (5.9 ± 0.7)·10−4 | not measured | not measured | not measured |
2 μM RF2 | (4.3 ± 0.3)·10−4 | not measured | (5.4 ± 0.4)·10−4 | not measured | (1.2 ± 0.2)·10−5 | (6.0 ± 1.9)·10−6 |
| ||||||
T. th. 70S + 500 nM E. coli RF1 | 0.023 ± 0.002 | not measured | 0.020 ± 0.003 | not measured | not measured | not measured |