| Chemicals, Peptides, and Recombinant Proteins |
|
| Common lab reagents |
N/A |
N/A |
|
| Critical Commercial Assays |
|
| Quick & Easy E.coli gene deletion |
Gene Bridges |
Cat#K006 |
|
| Deposited Data |
|
| F-pilus pED208 Cryo-EM map |
This study |
EMD-4042 |
| F-pilus pED208 structure |
This study |
5LEG |
| F-pilus (12.5Å axial rise) Cryo-EM map |
This study |
EMD-4046 |
| F-pilus (12.5Å axial rise) structure |
This study |
5LFB |
| F-pilus (13.2Å axial rise) Cryo-EM map |
This study |
EMD-4044 |
| F-pilus (13.2Å axial rise) structure |
This study |
5LER |
|
| Experimental Models: Organisms/Strains |
|
| E.coli: JE2571 (leu thr fla pil str) harboring the pED208 plasmid |
Lab of Prof. Ellen Zechner |
N/A |
|
E. coli: DH5α (F– Φ80lacZΔM15 Δ(lacZYA-argF) U169 recA1 endA1 hsdR17 (rK–, mK+) phoA supE44 λ– thi-1 gyrA96 relA1) harboring the pOX38-Cm plasmid |
Lab of Prof. Fernando de la Cruz |
N/A |
| f1 phage: ssDNA, filamentous |
Lab of Dr. Neville Firth |
N/A |
| HB101: auxotroph, F-, recA13, Res-, Mod-, Strr, Rifr
|
This study |
N/A |
|
| Recombinant DNA |
|
| Plasmid: pBAD-M11 (modified) |
This study |
N/A |
|
| Sequence-Based Reagents |
|
| Primers for Kanamycin cassette generation, traA allele cloning and mutagenesis, see Table S1
|
This study |
N/A |
|
| Software and Algorithms |
|
| Spider package |
Frank et al., 1996 |
http://spider.wadsworth.org/spider_doc/spider/docs/spider.html |
| CTFFIND3 |
Mindell and Grigorieff, 2003 |
http://grigoriefflab.janelia.org/ctf |
| EMAN2 |
Tang et al., 2007 |
http://blake.bcm.tmc.edu/emanwiki/EMAN2 |
| IHRSR |
Egelman, 2000 |
N/A |
| COOT |
Emsley et al., 2010 |
http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
| PHENIX |
Adams et al., 2010 |
https://www.phenix-online.org/documentation/index.html |
| CHIMERA |
Pettersen et al., 2004 |
http://www.rbvi.ucsf.edu/chimera/ |
| Molprobity |
Chen et al., 2010 |
http://molprobity.biochem.duke.edu/ |
| LSQKAB |
Kabsch, 1976 |
http://www.ccp4.ac.uk/ |
| PDBSET |
Winn et al., 2011 |
http://www.ccp4.ac.uk/ |
| PYMOL |
Molecular Graphics System, Version 1.8 Schrödinger, LLC |
https://www.pymol.org/ |