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. Author manuscript; available in PMC: 2017 Oct 15.
Published in final edited form as: J Comput Chem. 2016 Aug 11;37(27):2436–2446. doi: 10.1002/jcc.24467

Table 3.

The detailed EPB energy changes for six selected complexes for the calculations reported in Table 2. Grid spacings are in Angstrom, and the free energies are in kcal/mol.

Spacing 0.25 0.50 1.00
CDK+PKA
(1Q8W)
ΔG=−8.22
ΔGpb 38.22 38.05 37.66
Gcomplex −1015.08 −1009.11 −989.98
Greceptor −1037.07 −1030.98 −1011.63
Gligand −16.23 −16.18 −16.01
Glucosidase
(2J75)
ΔG=−10.01
ΔGpb 18.45 18.16 17.15
Gcomplex −1155.17 −1148.50 −1127.40
Greceptor −1164.35 −1157.53 −1136.03
Gligand −9.26 −9.13 −8.52
Thrombin
(1VZQ)
ΔG=−17.52
ΔGpb 3.75 3.36 2.26
Gcomplex −1013.07 −1008.16 −992.10
Greceptor −998.43 −993.21 −976.32
Gligand −18.39 −18.31 −18.03
Trypsin
(1O2Q)
ΔG=−18.87
ΔGpb 19.87 19.67 18.94
Gcomplex −531.31 −527.06 −513.28
Greceptor −540.93 −536.51 −522.09
Gligand −10.26 −10.22 −10.13
Urokinase
(1C5Z)
ΔG=−13.23
ΔGpb 38.41 38.32 37.97
Gcomplex −660.30 −655.93 −641.54
Greceptor −684.76 −680.31 −665.62
Gligand −13.96 −13.94 −13.89
Factor Xa
(1LPZ)
ΔG=−20.19
ΔGpb 12.93 12.77 12.31
Gcomplex −687.45 −682.79 −668.09
Greceptor −683.83 −679.08 −664.12
Gligand −16.55 −16.48 −16.28