Figure 2. Accuracy assessment of the RNA-seq-based SNPs and its comparison with exome-sequencing-based SNPs.

Proportion of RNA-seq-based SNPs also present in the exome-sequencing data obtained by Mascher et al.³³ in H602 (a) and in J247 (b). Identical call A: SNPs consistent with exome-sequencing-based SNPs and called by all programs. Identical call B: SNPs consistent with exome-sequencing-based SNPs and called by one or two program(s). Identical call C: SNPs shared with raw data of the exome-sequencing dataset, which were filtered by our threshold. Different call: SNPs inconsistent between the RNA-seq and the exome-sequencing datasets. RNA-seq only: SNPs only observed in the RNA-seq dataset.