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. 2016 Sep 12;6:33199. doi: 10.1038/srep33199

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Copyright © 2016, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(a) Genome-scale statistics and LD blocks of domesticated barley sub-populations based on the bi-allelic SNP dataset. (1) Haplotype diversity calculated for the occidental (red), oriental (green), and marginal (blue) barley populations using sliding windows of 5 million bases. (2–4) Pairwise F_ST values calculated for the occidental and oriental groups (2), occidental and marginal groups (3) and oriental and marginal groups (4) using sliding windows of 5 million bases. (5) LD blocks (≥10 kb) of occidental (red) and oriental (green) barley sub-populations. (6) Density distribution of transcribed regions for the integrated dataset comprising annotated genes and the putative novel transcribed regions identified in the RNA-seq analysis. (b) LD decay plots for the occidental (red) and oriental (green) barley sub-populations. The average r² values were plotted against physical distance.