TABLE 3.

Sequence analysis and data refinement summary

Parameter	Value
Sample reads (no.)	69,030,392
Mapped bases (no.)	6,903,039,200
Paired reads (no.)	68,099,169
Properly paired reads (orientation and distance) (no.)	66,604,338
Raw coverage depth (avg)	2,568
Read mapping to NCTC8325 sequence (NC_007795) (%)	98.00
Read mapping corrected for phage loss (%)	99.95
SNPs uncorrected vs NCTC8325 sequence (NC_007795) (no.)	125
Indels uncorrected vs NCTC8325 sequence (NC_007795) (no.)	7
SNPs vs AR1089/8325-4 (no.)	4
Indels vs AR1089/8325-4 (no.)	1
bp in AR738 assembled genome (no.)	2,687,774