Extended Data Table 3. Summary of cryo-EM data and statistics.
| a. Statistics of all cryo-EM reconstructions | |||||
| Samples | Micrographs collected | Particles used for final reconstruction | Resolution (Å) | ||
| APC/CMCC-Closed | 20,234 | 155,263 | 4.2 | ||
| APC/CMCC-Open | 6,188 | 8.6 | |||
| APC/CUbcH10-MCC | 2,340 | 8,491 | 8.9 | ||
| APC/CΔApc15-MCC | 5,054 | 163,308 | 4.8 | ||
| b. Statistics of all cryo-EM structure determination | |||||
| Data collection | |||||
| EM | FEI Polara, 300K eV | ||||
| Detector | FEI Falcon III | ||||
| Pixel size (Å) | 1.36 | ||||
| Defocus range (µm) | 2.0-4.0 | ||||
| Reconstruction | APC/CMCC-Closed | APC/CMCC-Open | APC/CUbcH10-MCC | APC/CΔApc15-MCC | |
| Software | RELION 1.4 | RELION 1.4 | RELION 1.4 | RELION 1.4 | |
| Accuracy of rotation (degrees) | 1.318 | 2.594 | 3.235 | 1.61 | |
| Accuracy of translations (pixels) | 0.843 | 1.763 | 2.09 | 1.08 | |
| Final resolution (Å) | 4.2 | 8.6 | 8.9 | 4.8 | |
| Refinement | APC/CMCC-Closed | ||||
| Software | RefMac 5.8 | ||||
| Refmac weight | 0.04 | ||||
| Resolution limit (Å) | 4.0 | ||||
| Residue number | 9,014 | ||||
| Average Fourier shell correlation | 0.761 | ||||
| R factor | 0.2505 | ||||
| Rms bind length (Å) | 0.0126 | ||||
| Rms bond angle (°) | 1.746 | ||||
| Validation | |||||
| Ramachandran plot | |||||
| Preferred | 8427 (93.49%) | ||||
| Allowed | 353 (3.92%) | ||||
| Outliers | 234 (2.60%) | ||||