Extended Data Table 3. Summary of cryo-EM data and statistics.
a. Statistics of all cryo-EM reconstructions | |||||
Samples | Micrographs collected | Particles used for final reconstruction | Resolution (Å) | ||
APC/CMCC-Closed | 20,234 | 155,263 | 4.2 | ||
APC/CMCC-Open | 6,188 | 8.6 | |||
APC/CUbcH10-MCC | 2,340 | 8,491 | 8.9 | ||
APC/CΔApc15-MCC | 5,054 | 163,308 | 4.8 | ||
b. Statistics of all cryo-EM structure determination | |||||
Data collection | |||||
EM | FEI Polara, 300K eV | ||||
Detector | FEI Falcon III | ||||
Pixel size (Å) | 1.36 | ||||
Defocus range (µm) | 2.0-4.0 | ||||
Reconstruction | APC/CMCC-Closed | APC/CMCC-Open | APC/CUbcH10-MCC | APC/CΔApc15-MCC | |
Software | RELION 1.4 | RELION 1.4 | RELION 1.4 | RELION 1.4 | |
Accuracy of rotation (degrees) | 1.318 | 2.594 | 3.235 | 1.61 | |
Accuracy of translations (pixels) | 0.843 | 1.763 | 2.09 | 1.08 | |
Final resolution (Å) | 4.2 | 8.6 | 8.9 | 4.8 | |
Refinement | APC/CMCC-Closed | ||||
Software | RefMac 5.8 | ||||
Refmac weight | 0.04 | ||||
Resolution limit (Å) | 4.0 | ||||
Residue number | 9,014 | ||||
Average Fourier shell correlation | 0.761 | ||||
R factor | 0.2505 | ||||
Rms bind length (Å) | 0.0126 | ||||
Rms bond angle (°) | 1.746 | ||||
Validation | |||||
Ramachandran plot | |||||
Preferred | 8427 (93.49%) | ||||
Allowed | 353 (3.92%) | ||||
Outliers | 234 (2.60%) | ||||