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. Author manuscript; available in PMC: 2017 Feb 25.
Published in final edited form as: Nature. 2016 Aug 25;536(7617):431–436. doi: 10.1038/nature19083

Extended Data Table 3. Summary of cryo-EM data and statistics.

a. Statistics of all cryo-EM reconstructions

Samples Micrographs collected Particles used for final reconstruction Resolution (Å)
 APC/CMCC-Closed 20,234 155,263 4.2
 APC/CMCC-Open 6,188 8.6
 APC/CUbcH10-MCC 2,340 8,491 8.9
 APC/CΔApc15-MCC 5,054 163,308 4.8
b. Statistics of all cryo-EM structure determination

Data collection
 EM FEI Polara, 300K eV
 Detector FEI Falcon III
 Pixel size (Å) 1.36
 Defocus range (µm) 2.0-4.0
Reconstruction APC/CMCC-Closed APC/CMCC-Open APC/CUbcH10-MCC APC/CΔApc15-MCC
 Software RELION 1.4 RELION 1.4 RELION 1.4 RELION 1.4
 Accuracy of rotation (degrees) 1.318 2.594 3.235 1.61
 Accuracy of translations (pixels) 0.843 1.763 2.09 1.08
 Final resolution (Å) 4.2 8.6 8.9 4.8
Refinement APC/CMCC-Closed
 Software RefMac 5.8
 Refmac weight 0.04
 Resolution limit (Å) 4.0
 Residue number 9,014
 Average Fourier shell correlation 0.761
 R factor 0.2505
 Rms bind length (Å) 0.0126
 Rms bond angle (°) 1.746
Validation
Ramachandran plot
     Preferred 8427 (93.49%)
     Allowed 353 (3.92%)
     Outliers 234 (2.60%)