Table 2.
strain or plasmid | (A) Strains and Plasmids Used in This Study genotype or description |
source or reference |
---|---|---|
strain E. coli Top 10 |
F− mcrA Δ(mrr-hsdRMS-mcrBC) Φ80lacZ M15 ΔlacX74 recAl araD139 A(ara-leu)7697 galU galK rpsL (Strr) endAl nupG |
Invitrogen |
E. coli Top 10 Δrnf | this study | |
E. coli LMG194 | F− AlacX74 galE thi rpsL ΔphoA (Pvull) Aara714 leu::TnlO | Invitrogen |
V. cholerae 0395N1 | Smr | 32 |
V. cholerae 0395 INI Δnqr | Smr | 26 |
plasmid | ||
pBAD-PhoA | pBAD-22 derivative containing signal sequence-less phoA with a 5′ Kpnl site | 33 |
pBAD-GFP | pBAD plasmid with cycle 3 grp | 34 |
ARANC | pBAD-PhoA rnfA; full-length C-terminal fusion | this study |
ARBNC | pBAD-PhoA rnfB; full-length C-terminal fusion | this study |
ARDNC | pBAD-PhoA rnfD; full-length C-terminal fusion | this study |
ARDN92 | pBAD-PhoA rnfD; C-terminal fusion at residue 92 | this study |
ARDN266 | pBAD-PhoA rnfD; C-terminal fusion at residue 266 | this study |
ARGNC | pBAD-PhoA rnfG; full-length C-terminal fusion | this study |
GRCNC | pBAD-GFP rnfC; full-length C-terminal fusion | this study |
GRDNC | pBAD-GFP rnfD; full-length C-terminal fusion | this study |
GRENC | pBAD-GFP rnfE; fiall-length C-terminal fusion | this study |
GRGNC | pBAD-GFP rnfG; full-length C-terminal fusion | this study |
(B) Primers Used in This Study | ||
---|---|---|
fusion construct | forward 5′ → 3′' | reverse 5′ → 3′ |
ARANC | GGTACCGTTATTGCTTTGGCAAAGCAGG | GGTACCTTCAGTTTCACCAATCCGGTAAAG |
ARBNC | GGTACCGAGTACCATAGTCATCGCTG | GGTACCTTATTCGCACTTTTCTGCGC |
ARDNC | GGTACCGGCCTTCTTTATTGCTAGCTC | GGTACCTTGTGTCCGTAAGTTCTCGG |
ARDN92 | GGTACCGGCCTTCTTTATTGCTAGCTC | GGTACCAAGAGGGGCGGGATAG |
ARDN266 | GGTACCGGCCTTCTTTATTGCTAGCTC | GGTACCAAGGTTGTTCCCGGTGC |
ARGNC | GGTACCGCTGACAGCAATTCGAAAAAATG | GGTACCTTTTGACCCTCACACGGATTC |
GRCNC | GCTAGCTTGTCATTAATCGAACAAATCAAATC | GCTAGCGTCTTTCTCCTCAGCGTTTAA |
GRDNC | ACTAGTGCCTTCTTTATTGCTAGCTCCC | ACTAGTGTGTCCGTAAGTTCTCGGTTTG |
GRENC | GCTAGCAATGAAAACCGAACTCTGATGTTAAATGGC | GCTAGCGACATTGGTCACGCGTGC |
GRGNC RnfB |
GTAGCCTGACAGCAATTCGAAAAAATGG | GCTAGCTTGACCCTCACACGGATTC |
RnfBEc | GCTAGAATTCGAGGAAATAATAAATGAATGCTATCTGGATTGCCG | AGTCAAGCTTTCAATGGTGATGGTGATGACCTTCAAGCTCGCCCTTAGCATGGTGTTCCACGG |