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. Author manuscript; available in PMC: 2016 Sep 12.
Published in final edited form as: Biochemistry. 2015 Apr 10;54(15):2443–2455. doi: 10.1021/acs.biochem.5b00020

Table 2.

strain or plasmid (A) Strains and Plasmids Used in This Study
genotype or description
source or reference
strain
E. coli Top 10

F mcrA Δ(mrr-hsdRMS-mcrBC) Φ80lacZ M15 ΔlacX74 recAl araD139 A(ara-leu)7697 galU galK rpsL (Strr) endAl nupG
Invitrogen
  E. coli Top 10 Δrnf this study
  E. coli LMG194 F AlacX74 galE thi rpsL ΔphoA (Pvull) Aara714 leu::TnlO Invitrogen
  V. cholerae 0395N1 Smr 32
  V. cholerae 0395 INI Δnqr Smr 26
plasmid
  pBAD-PhoA pBAD-22 derivative containing signal sequence-less phoA with a 5 Kpnl site 33
  pBAD-GFP pBAD plasmid with cycle 3 grp 34
  ARANC pBAD-PhoA rnfA; full-length C-terminal fusion this study
  ARBNC pBAD-PhoA rnfB; full-length C-terminal fusion this study
  ARDNC pBAD-PhoA rnfD; full-length C-terminal fusion this study
  ARDN92 pBAD-PhoA rnfD; C-terminal fusion at residue 92 this study
  ARDN266 pBAD-PhoA rnfD; C-terminal fusion at residue 266 this study
  ARGNC pBAD-PhoA rnfG; full-length C-terminal fusion this study
  GRCNC pBAD-GFP rnfC; full-length C-terminal fusion this study
  GRDNC pBAD-GFP rnfD; full-length C-terminal fusion this study
  GRENC pBAD-GFP rnfE; fiall-length C-terminal fusion this study
  GRGNC pBAD-GFP rnfG; full-length C-terminal fusion this study
      (B) Primers Used in This Study
fusion construct    forward 5′ → 3′'    reverse 5′ → 3′
ARANC GGTACCGTTATTGCTTTGGCAAAGCAGG GGTACCTTCAGTTTCACCAATCCGGTAAAG
ARBNC GGTACCGAGTACCATAGTCATCGCTG GGTACCTTATTCGCACTTTTCTGCGC
ARDNC GGTACCGGCCTTCTTTATTGCTAGCTC GGTACCTTGTGTCCGTAAGTTCTCGG
ARDN92 GGTACCGGCCTTCTTTATTGCTAGCTC GGTACCAAGAGGGGCGGGATAG
ARDN266 GGTACCGGCCTTCTTTATTGCTAGCTC GGTACCAAGGTTGTTCCCGGTGC
ARGNC GGTACCGCTGACAGCAATTCGAAAAAATG GGTACCTTTTGACCCTCACACGGATTC
GRCNC GCTAGCTTGTCATTAATCGAACAAATCAAATC GCTAGCGTCTTTCTCCTCAGCGTTTAA
GRDNC ACTAGTGCCTTCTTTATTGCTAGCTCCC ACTAGTGTGTCCGTAAGTTCTCGGTTTG
GRENC GCTAGCAATGAAAACCGAACTCTGATGTTAAATGGC GCTAGCGACATTGGTCACGCGTGC
GRGNC
RnfB
GTAGCCTGACAGCAATTCGAAAAAATGG GCTAGCTTGACCCTCACACGGATTC
  RnfBEc GCTAGAATTCGAGGAAATAATAAATGAATGCTATCTGGATTGCCG AGTCAAGCTTTCAATGGTGATGGTGATGACCTTCAAGCTCGCCCTTAGCATGGTGTTCCACGG