Table 1. MF-RA for 20 amino acids.
RES | 11 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
---|---|---|---|---|---|---|---|---|---|---|
A2 | 1.32 | 1.33 | 1.3 | 1.87 | 1.02 | 1.93 | 1.62 | 1.74 | 1.34 | 0.91 |
a2 | 0.53 | 0.58 | 0.55 | 0.85 | 0.68 | 0.88 | 0.78 | 0.82 | 0.71 | 0.61 |
C | 1.78 | 2.28 | 3.98 | 2.56 | 2.2 | 4.42 | 2.74 | 2.9 | 3.39 | 2.76 |
c | 0.65 | 0.63 | 0.81 | 0.86 | 0.61 | 0.71 | 0.34 | 0.69 | 0.65 | 0.71 |
D | 1.46 | 1.29 | 0.83 | 0.76 | 0.8 | 0.61 | 0.42 | 0.46 | 0.62 | 0.53 |
d | 3.26 | 2.48 | 3.61 | 2.65 | 1.68 | 2.36 | 1.58 | 2.27 | 1.49 | 1.73 |
E | 0.5 | 0.49 | 0.83 | 0.56 | 0.74 | 0.88 | 0.74 | 0.54 | 0.53 | 0.34 |
e | 1.96 | 2.21 | 2.61 | 2.87 | 2.95 | 2.13 | 2.36 | 1.72 | 1.62 | 1.37 |
F | 1.43 | 1.84 | 1.65 | 1.67 | 2.03 | 1.95 | 2.86 | 1.75 | 1.69 | 2.49 |
f | 0.68 | 0.83 | 0.92 | 0.89 | 0.87 | 0.88 | 0.95 | 0.57 | 0.8 | 0.85 |
G | 2.12 | 2.05 | 2.31 | 3.25 | 2.24 | 1.62 | 1.85 | 1.54 | 3.27 | 1.6 |
g | 0.9 | 0.83 | 0.98 | 0.99 | 1.27 | 1.11 | 1.04 | 1.04 | 1.76 | 0.92 |
H | 1.47 | 1.56 | 1.08 | 1.17 | 1.58 | 1.16 | 1.98 | 1.29 | 0.93 | 1.45 |
h | 2.14 | 2.49 | 2.37 | 2.48 | 1.77 | 2.68 | 3.31 | 2.43 | 1.49 | 1.87 |
I | 1.41 | 1.43 | 1.69 | 1.34 | 1.61 | 2.52 | 1.33 | 2.21 | 2.16 | 2.07 |
i | 0.61 | 0.66 | 0.51 | 0.58 | 0.6 | 0.61 | 0.38 | 0.7 | 0.89 | 0.65 |
K | 0.51 | 0.39 | 0.33 | 0.56 | 0.47 | 0.39 | 0.43 | 0.44 | 0.39 | 0.43 |
k | 3.46 | 3.39 | 2.35 | 5.73 | 3.83 | 2.61 | 3.02 | 3.96 | 3.61 | 3.92 |
L | 1.46 | 1.63 | 1.46 | 1.41 | 1.23 | 1.88 | 1.6 | 1.53 | 1.48 | 1.2 |
l | 0.65 | 0.93 | 0.55 | 0.61 | 0.54 | 0.46 | 0.49 | 0.48 | 0.59 | 0.45 |
M | 1.77 | 2.45 | 1.94 | 2.15 | 1.68 | 2.08 | 2.26 | 2.27 | 2.24 | 1.48 |
m | 0.74 | 1.36 | 0.83 | 1.15 | 0.78 | 0.69 | 0.89 | 0.98 | 0.83 | 0.61 |
N | 1.01 | 1.27 | 0.76 | 0.87 | 1.16 | 0.41 | 0.73 | 0.78 | 0.91 | 0.75 |
n | 1.71 | 1.92 | 1.63 | 2.11 | 1.57 | 0.99 | 1.48 | 1.31 | 1.66 | 1.48 |
P | 1.53 | 0.42 | 1.5 | 0.78 | 0.54 | 1.5 | 0.51 | 0.62 | 0.48 | 0.78 |
p | 1.5 | 0.44 | 1.5 | 1.16 | 0.68 | 1.5 | 0.55 | 0.66 | 0.27 | 0.8 |
Q | 0.53 | 0.57 | 0.46 | 0.58 | 0.85 | 0.46 | 0.75 | 0.68 | 0.5 | 0.63 |
q | 1.45 | 1.98 | 1.17 | 1.96 | 1.88 | 1.09 | 1.56 | 1.47 | 1.47 | 1.7 |
R | 0.71 | 0.66 | 0.78 | 0.68 | 0.97 | 0.86 | 1.08 | 0.93 | 0.87 | 1.03 |
r | 2.88 | 2.71 | 3.05 | 3.74 | 2.59 | 2.39 | 2.75 | 2.43 | 2.52 | 2.94 |
S | 0.79 | 0.84 | 1.47 | 0.92 | 1.31 | 1.11 | 1.51 | 1.05 | 0.94 | 0.99 |
s | 1.13 | 0.84 | 1.53 | 1.36 | 1.13 | 1.08 | 1.24 | 1.07 | 0.95 | 1.2 |
T | 0.78 | 0.68 | 0.68 | 0.54 | 0.96 | 0.9 | 1.46 | 1.03 | 0.68 | 1.42 |
t | 0.89 | 1.03 | 0.73 | 1.05 | 1.12 | 0.82 | 1.13 | 1.03 | 0.9 | 1.4 |
V | 1.06 | 1.05 | 0.9 | 1.14 | 1.47 | 1.92 | 1.47 | 1.8 | 1.1 | 2.03 |
v | 0.48 | 0.53 | 0.37 | 0.57 | 0.67 | 0.6 | 0.57 | 0.67 | 0.58 | 0.67 |
W | 1.77 | 1.9 | 1.71 | 2.03 | 2.59 | 1.69 | 3.89 | 3.8 | 2.75 | 3.12 |
w | 1.6 | 1.28 | 1.33 | 1.6 | 1.44 | 0.98 | 1.25 | 1.2 | 1.4 | 1.2 |
Y | 1.12 | 1.17 | 1.26 | 1.33 | 1.97 | 1.34 | 2.13 | 1.66 | 1.09 | 2.03 |
y | 1.2 | 1.07 | 1.43 | 1.5 | 1.65 | 1.28 | 1.59 | 1.23 | 0.96 | 1.14 |
RES | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 204 |
A | 0.82 | 1.43 | 0.77 | 1.58 | 1 | 0.81 | 2.47 | 0.32 | 0.91 | 1.54 |
a | 0.63 | 0.84 | 0.45 | 0.86 | 0.75 | 1.25 | 1.01 | 0.56 | 0.72 | 0.89 |
C | 3.08 | 2.01 | 3.73 | 2.96 | 3.3 | 1.5 | 4.62 | 3.11 | 2.54 | 3.07 |
c | 0.72 | 0.96 | 0.75 | 1.29 | 0.58 | 1.5 | 0.63 | 2.82 | 0.71 | 1.35 |
D | 0.76 | 0.58 | 0.52 | 0.57 | 0.31 | 2.7 | 1.12 | 3.55 | 0.83 | 0.7 |
d | 2.16 | 1.08 | 1.92 | 1.87 | 0.6 | 0.91 | 2.3 | 2.62 | 1.88 | 1.41 |
E | 0.45 | 0.57 | 0.31 | 2.11 | 0.35 | 1.5 | 1.33 | 0.63 | 0.44 | 0.4 |
e | 1.72 | 2.6 | 1.69 | 4.78 | 0.93 | 1.5 | 2.64 | 1.01 | 1.96 | 0.77 |
F | 2.94 | 1.73 | 2.75 | 2.51 | 2.9 | 3.38 | 3.45 | 1.56 | 1.44 | 1.85 |
f | 0.87 | 0.83 | 1.01 | 1.31 | 1.52 | 1.87 | 1.03 | 1.3 | 0.74 | 0.89 |
G | 1.88 | 3.96 | 2.79 | 1.26 | 1.45 | 0.96 | 1.33 | 0.34 | 1.62 | 1.51 |
g | 1.07 | 2.37 | 1.32 | 0.69 | 1.29 | 0.98 | 0.73 | 0.49 | 0.95 | 1.48 |
H | 1.59 | 0.97 | 1.45 | 2.74 | 3.65 | 1.5 | 2.73 | 6.98 | 1.27 | 1.22 |
h | 1.75 | 1.19 | 2.18 | 2.65 | 1.72 | 1.5 | 3.05 | 3.33 | 1.98 | 3.64 |
I | 2.23 | 1.19 | 1.86 | 1.07 | 0.68 | 1.5 | 5.84 | 1.2 | 1.02 | 0.9 |
i | 0.65 | 0.6 | 0.64 | 0.39 | 0.24 | 1.5 | 1.87 | 0.94 | 0.65 | 0.55 |
K | 0.54 | 0.32 | 0.54 | 0.42 | 0.44 | 1.5 | 1.18 | 0.38 | 0.38 | 0.81 |
k | 4.73 | 3.27 | 5.08 | 8.1 | 3.5 | 1.5 | 9.31 | 2.11 | 3.11 | 3.6 |
L | 1.26 | 1.36 | 1.42 | 0.3 | 0.72 | 4.16 | 2.28 | 1.43 | 0.89 | 0.76 |
l | 0.45 | 0.68 | 0.53 | 0.16 | 0.41 | 2.5 | 0.6 | 0.49 | 0.57 | 0.52 |
M | 2.02 | 1.59 | 2.38 | 1.94 | 0.68 | 1.5 | 2.2 | 1.11 | 0.6 | 0.89 |
m | 0.78 | 0.79 | 0.91 | 1.45 | 0.67 | 1.5 | 0.63 | 0.7 | 0.81 | 0.36 |
N | 1.01 | 1.28 | 1 | 0.3 | 0.54 | 1.5 | 1.28 | 0.56 | 1.08 | 0.5 |
n | 1.63 | 2.74 | 1.99 | 0.68 | 0.87 | 1.5 | 1.08 | 1.21 | 1.45 | 0.63 |
P | 0.54 | 1.5 | 0.51 | 1.5 | 0.52 | 1.5 | 1.5 | 1.5 | 0.47 | 0.33 |
p | 0.81 | 1.5 | 1.15 | 1.5 | 0.43 | 1.5 | 1.5 | 1.5 | 0.87 | 5.51 |
Q | 0.66 | 0.48 | 0.48 | 1.1 | 0.53 | 1.5 | 0.7 | 0.75 | 0.52 | 0.15 |
q | 1.58 | 1.44 | 1.5 | 1.76 | 1.23 | 1.5 | 1.4 | 1.06 | 1.4 | 0.41 |
R | 1.07 | 0.78 | 0.77 | 1.26 | 0.38 | 2.25 | 1.18 | 0.61 | 0.7 | 0.8 |
r | 2.92 | 2.27 | 3.37 | 5.06 | 2.67 | 3.75 | 1.68 | 1.13 | 2.62 | 1.89 |
S | 0.87 | 1.27 | 1.23 | 0.61 | 1.15 | 3.49 | 1.79 | 1.07 | 0.95 | 0.93 |
s | 1.14 | 1.33 | 1.33 | 0.82 | 0.9 | 1.67 | 1.38 | 0.79 | 1.09 | 0.58 |
T | 1.16 | 0.79 | 1.69 | 0.94 | 1.01 | 1.02 | 2.01 | 2.03 | 0.77 | 0.54 |
t | 1.05 | 1.1 | 1.63 | 0.68 | 0.63 | 1.56 | 0.82 | 0.65 | 0.82 | 0.4 |
V | 2.1 | 0.84 | 1.39 | 0.79 | 1.3 | 1.5 | 4.87 | 1.11 | 0.61 | 0.85 |
v | 0.73 | 0.56 | 0.55 | 0.52 | 0.26 | 1.5 | 1.34 | 0.66 | 0.47 | 0.53 |
W | 2.72 | 1.92 | 2.59 | 3.9 | 2.04 | 1.5 | 6.06 | 1.95 | 2.41 | 1.11 |
w | 1.19 | 1.17 | 1.32 | 4.49 | 2.67 | 1.5 | 1.66 | 1.21 | 1.35 | 1.1 |
Y | 2.18 | 1.92 | 1.89 | 2.59 | 2.32 | 1.35 | 2.4 | 2.31 | 1.64 | 0.85 |
y | 1.11 | 1.33 | 1.45 | 2.09 | 2.05 | 0.62 | 1.05 | 1.13 | 1.35 | 0.69 |
1Region in the Ramachandran plot.
2Capital letters indicate high-accessibility amino acids (relative SASA > 13.1%), whereas lowercase letters indicate low-accessibility amino acids (relativeSASA ≤ 13.1%).
3The backbone conformation is considered rare if fewer than 20 residues are located in the region, and the MF-RA value of rare-conformation amino acids is 1.5 based on Petock et al., who reported that these residues are likely to be located at the functional site35.
4DISICL divided the Ramachandran plot into 19 regions, and the rest of the area in the Ramachandran plot was considered the 20th region36.