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. 2016 Sep 13;17(1):729. doi: 10.1186/s12864-016-3037-z

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Workflow of recombination detection pipeline forTcTSgene family. a TcTS sequences are binned into similarity sets by scanning each TcTS gene for closest-matching non-self sequences within the TcTS gene family; b RDP is used to identify possible recombinant regions, recombination breakpoints, and the major and minor sequence donor(s) among the TcTS similarity sets; c False-positive recombination events are removed by realigning each recombination event’s triplet of mosaic sequence, major donor and minor donor