Table 1. A review of plasma preparation protocols in extracellular miRNA-disease association studies.
Study | Disease | AC | Freeze before platelet removal | Whole blood cent. speed | Time (min) | 2nd cent. speed | Time (min) | Yr. | PMID | Journal | |
---|---|---|---|---|---|---|---|---|---|---|---|
Wong et al. | HFpEF | EDTA | Yes | 3,488x g | 10 | No | 2015 | 25619197 | Eur J Heart Fail | B | |
Aherne et al. | Colorectal cancer | EDTA | Yes | 1,000x g | 10 | No | 2015 | 25924769 | BMC Cancer | C | |
Melman et al. | Response to CRT | ? | ? | ? | ? | ? | ? | 2015 | 25995320 | Circulation | C |
Ameling et al. | Associations with age, BMI, sex | EDTA | ? | ? | ? | ? | ? | 2015 | 26462558 | BMC Med Genomics | C |
Jaguszewski et al. | Takotsubo cardiomyopathy | EDTA | Yes | 1,300x g | 15 | No | 2014 | 24046434 | Eur Heart J. | C | |
Xiao et al. | Acute graft-versus-host disease | ? | No | 2,000 RPM | 10 | 12,000 RPM | 3 | 2014 | 24041574 | Blood | A |
Garcia et al. | Regression of LVH | EDTA | Yes | 1,389x g | 30 | No | 2014 | 23948643 | JAHA | C | |
Roncarati et al. | Hypertrophic cardiomyopathy | EDTA | Yes | 1,100x g | 20 | No | 2014 | 24161319 | JACC | C | |
Zanutto et al. | Colorectal cancer | EDTA | Yes | 3,000x g | 10 | 1,000x g | 5 | 2014 | 24423916 | Br J Cancer | C |
Huang et al. | Myocardial infarc | EDTA | No | 1,600x g | 10 | 16,000x g | 10 | 2014 | 24627568 | Circ. CV Genet | A |
Morely-Smith et al. | Response to LVAD | ? | ? | ? | ? | ? | ? | 2014 | 24961598 | Eur J Heart Fail | C |
Ward et al. | Hepatotoxicity or ischemic hepatitis | EDTA | Yes | 1,500x g | 20 | No | 2014 | 25092309 | PNAS | C | |
Pangxiang et al. | Intracranial aneurysm | EDTA | No | 1,600x g | 10 | 13,000x g | 10 | 2014 | 25249297 | JAHA | A |
Jansen et al. | Cardiovascular events | Citrate | No | 1,500x g | 15 | 13,000x g | 2 | 2014 | 25349183 | JAHA | A |
de Boer et al. | Aspirin effect on miR-126 | Citrate | Yes | 2,700x g | 15 | No | 2013 | 23386708 | Eur Heart J. | B | |
Dawson et al. | Atrial fibrillation | EDTA | Yes | 4,000 RPM | 20 | No | 2013 | 23459615 | Circulation | B | |
Williams et al. | Comprehensive sequencing | EDTA | No | 500x g | 5 | 16,060x g | 5 | 2013 | 23440203 | PNAS | A |
Ellis et al. | Heart failure | EDTA | Yes | ? | ? | No | 2013 | 23696613 | Eur J Heart Fail | C | |
Ferrajoli et al. | B-cell lymphocytosis and B chronic lymphocytic leukemia | Citrate | ? | ? | ? | ? | ? | 2013 | 23821659 | Blood | C |
Lee et al. | Recurrent papillary thyroid cancer | EDTA | Yes | 800x g | 15 | No | 2013 | 24301304 | Cancer | C | |
Zampetaki et al. | Myocardial Infarction | ? | ? | ? | ? | ? | ? | 2012 | 22813605 | JACC | C |
Kin et al. | AAA | ? | ? | ? | ? | ? | ? | 2012 | 23316282 | JAHA | C |
Moussat et al. | B-cell chronic lymphocytic leukemia | EDTA | No | 1,000x g | 10 | 10,000x g | 20 | 2011 | 21460253 | PNAS | A |
Boeri et al. | Lung cancer | EDTA | No | 1,258x g | ? | 1,258x g | ? | 2011 | 21300873 | PNAS | A |
Zuo et al. | Myelodysplastic syndrome | ? | ? | ? | ? | ? | ? | 2011 | 21602527 | Blood | C |
Li et al. | Hypertension | EDTA | ? | 1,000x g | 10 | No | 2011 | 21690488 | Circulation | C | |
Komatsu et al. | Esophageal cancer | ? | No | 1,500 RPM | 30 | 3,000 RPM | 5 min | 2011 | 21673684 | Br J Cancer | C |
Morimura et al. | Pancreatic cancer | Heparin | No | 1,500 RMP | 30 | 3,000 RPM | 5 min | 2011 | 22045190 | Br J Cancer | C |
De Rosa et al. | Transcoronary grandient | ? | ? | ? | ? | ? | ? | 2011 | 21969012 | Circulation | C |
Zile et al. | Left ventricular remodeling | ? | ? | ? | ? | ? | ? | 2011 | 21956146 | Circ. CV Genet | C |
Wang et al. | Acute myocardial infarction | EDTA | No | 820x g | 10 | 16,000x g | 10 | 2010 | 20159880 | Eur Heart J. | A |
Tijsen et al. | Heart failure | Citrate | Yes | 1,550x g | 10 | No | 2010 | 20185794 | Circ Res | B | |
Ho et al. | Pancreatic cancer | ? | Yes | 3000 RPM | 10 | 13,000x g | 10 | 2010 | 20360935 | Transl Oncol. | C |
Tsujiura et al. | Gastric cancer | ? | ? | ? | ? | ? | ? | 2010 | 20234369 | Br J Cancer | C |
Zampetaki et al. | Tyoe 2 diabetes | ? | Yes | ? | ? | ? | ? | 2010 | 20651284 | Circ Res | C |
Fichlscherer et al. | Coronary artery disease | EDTA | ? | ? | ? | ? | ? | 2010 | 20595655 | Circ Res | C |
D’Alessandra et al. | Myocardial infarction | EDTA | No | 1,500x g | 15 | 14,000x g | 15 | 2010 | 20534597 | Eur Heart J. | A |
Maarten et al. | Myocardial damage | Citrate EDTA | Yes | ? | ? | ? | ? | 2010 | 20921333 | Circ CV Genet. | C |
Wang et al. | Drug induced liver injury | ? | ? | ? | ? | ? | ? | 2009 | 19246379 | PNAS | C |
Tanaka et al. | Acute leukemia | ? | no | 1,600x g | 15 | No | 2009 | 19440243 | PLoS One | C | |
Mitchell PS et al. | Prostate cancer | EDTA | yes | 1,200x g | 10 | No | 2008 | 18663219 | PNAS | C | |
Ng et al. | Colorectal cancer | EDTA | no | 1,600x g | 10 | 16,0000x g | 10 | 2008 | 19201770 | Gut | A |
AC = anticoagulant; A = likely removed platelets; B = unclear whether platelets were removed; C = unlikely platelets were removed or not enough detail in methods to determine.