Table 1. Protein Models Used for Markovian and Non-Markovian Analysesa.
| protein | num. residues | time (μs) | RMSD (folded) | RMSD (unfolded) | reference structure (PDB ID) |
|---|---|---|---|---|---|
| chignolin | 10 | 106 | <1.10 Å | >7.0 Å | 5AWL |
| Trp-cage | 20 | 208 | <1.75 Å | >10.0 Å | 2JOF |
| NTL9 | 39 | 1100 | <1.50 Å | >10.0 Å | 2HBA |
| villin | 35 | 125 | <1.50 Å | >11.0 Å | 2F4K |
a
For each system, the table shows the number of residues, the total simulation time used in the analysis, and the state definitions based on heavy-atom RMSD with respect to the folded structure whose protein data bank code (PDB ID) is given in the last column.