Table II.
Dataset | Cancer type | End point | Cohort | Contributor | Array type | Probe ID | No. | Cut point | Minimum P-value | Corrected P-value | ln (HR-high/HR-low) | COX P-value | ln (HR) | HR (95% CI) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSE12417-GPL570 | Blood | OS | AMLCG (2004) | Metzeler | HG-U133_Plus_2 | 1552501_a_at | 79 | 0.27 | 0.114 | – | −0.50 | 0.41 | −0.28 | 0.76 (0.39–1.47) |
GSE16581 | Brain | OS | UCLA | Lee | HG-U133_Plus_2 | 1552501_a_at | 67 | 0.25 | 0.021 | 0.275 | −1.44 | 0.63 | −0.81 | 0.44 (0.02–12.73) |
GSE9195 | Breast | DMFS | GUYT2 | Loi | HG-U133_Plus_2 | 1552501_a_at | 77 | 0.74 | 0.058 | – | −15.50 | 1.00 | −0.01 | 0.99 (0.06–16.54) |
GSE17536 | Colorectal | DFS | MCC | Smith | HG-U133_Plus_2 | 1552501_a_at | 145 | 0.70 | 0.005 | 0.087 | −1.39 | 0.12 | −1.87 | 0.15 (0.01–1.62) |
OS | 177 | 0.85 | 0.035 | 0.389 | −0.94 | 0.25 | −0.95 | 0.39 (0.08–1.96) | ||||||
DSS | 177 | 0.84 | 0.023 | 0.295 | −1.27 | 0.58 | −0.52 | 0.60 (0.10–3.68) | ||||||
GSE14333 | Colorectal | DFS | Melbourne | Jorissen | HG-U133_Plus_2 | 1552501_a_at | 226 | 0.85 | 0.076 | – | −1.01 | 0.25 | −0.17 | 0.85 (0.64–1.13) |
GSE22138 | Eye | DMFS | BRCIC | Laurent | HG-U133_Plus_2 | 1552501_a_at | 63 | 0.81 | 0.015 | 0.216 | −1.60 | 0.35 | −6.72 | 0.00 (0–1599.31) |
GSE2837 | Head and neck | RFS | VUMC, VAMC, UTMDACC (1992–2005) | Chung | U133_X3P | Hs2.160954.1. S1_3p_s_at | 28 | 0.25 | 0.117 | – | −0.90 | 0.23 | −3.90 | 0.02 (0.00–12.57) |
GSE13213 | Lung | OS | Nagoya (1995–1999, 2002–2004) | Tomida | G4112F | A_23_P400378 | 117 | 0.31 | 0.107 | – | −0.47 | 0.97 | −0.01 | 0.99 (0.62–1.59) |
GSE31210 | Lung | OS | NCCRI | Okayama | HG-U133_Plus_2 | 1552501_a_at | 204 | 0.87 | 0.121 | – | −1.45 | 0.81 | 0.05 | 1.05 (0.70–1.58) |
RFS | 204 | 0.88 | 0.052 | – | −1.30 | 0.48 | −0.11 | 0.90 (0.67–1.21) | ||||||
GSE17537 | Colorectal | DSS | VMC | Smith | HG-U133_Plus_2 | 1552501_a_at | 49 | 0.90 | 0.151 | – | −15.26 | 0.87 | 0.30 | 1.35 (0.04–44.67) |
GSE8894 | Lung | RFS | Seoul (1995–2005) | Lee | HG-U133_Plus_2 | 1552501_a_at | 138 | 0.26 | 0.002 | 0.048b | −0.75 | 0.08 | −10.60 | 0.00 (0.00–3.68) |
GSE17710 | Lung | OS U | NC | Wilkerson | Agilent-UNC-custom-4X44K | 25074 | 56 | 0.21 | 0.267 | – | −0.44 | 0.83 | −0.11 | 0.89 (0.32–2.53) |
GSE9891 | Ovarian | OS | AOCS, RBH, WH, NKI-AVL (1992–2006) | Tothill | HG-U133_Plus_2 | 1552501_a_at | 278 | 0.74 | 0.024 | 0.304 | −0.50 | 0.37 | −0.35 | 0.71 (0.33–1.52) |
GSE17260 | Ovarian | PFS | Niigata (1997–2008) | Yoshihara | G4112A | A_23_P400378 | 110 | 0.70 | 0.077 | – | −0.46 | 0.99 | 0.00 | 1.00 (0.58–1.73) |
OS | 110 | 0.69 | 0.106 | – | −0.57 | 0.56 | −0.20 | 0.82 (0.41–1.63) | ||||||
GSE19234 | Skin | OS | NYU | Bogunovic | HG-U133_Plus_2 | 1552501_a_at | 38 | 0.79 | 0.093 | – | −1.20 | 0.31 | −0.66 | 0.52 (0.14–1.86) |
P<0.05 is defined as statistically significant. OS, overall survival; DSS, disease-specific survival; DMFS, disease metastasis-free survival; RFS, relapse-free survival; PFS, progression-free survival; HR, hazard ratio; CI, confidence interval.