Table 3.
Overlapping epitopes on the E protein.
| BepiPred | Ellipro | SVMTriP |
|---|---|---|
|
8SRDFVEGLSGATW
20
EP1/E |
16
SGATWV21
EP2/E |
NP |
|
| ||
|
63
AKISNTTTDSRCPTQGEATLVEEQDAN
89
EP6/E |
62EAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRGWGNGCGLFGKGSLITCAKFKCVT123
EP5/E |
NP |
|
97
VDRGWGNGCGLF
108
EP7/E | ||
|
| ||
|
144HTGDQHQVGNESTEHGTTATITPQAPTTEIQLT
176
EP8/E |
165
PQAPTTEIQLTDYGALTL
182
EP9/E |
NP |
|
180
ALTLDCSPRTGLD192
EP10/E | ||
|
| ||
|
218LPWTSGASTSQETWNR233
EP11/E |
223
GASTSQETW
231
EP12/E |
NP |
|
| ||
|
242
TAHAKKQ
248
EP14/E |
237LVTFKTAHAKKQEVVVLGS
255
EP13/E |
NP |
|
252
VLGSQEGAMHTALTGATEIQTSGTTTI278
EP15/E | ||
|
| ||
|
306
FKLEKEVAETQHGT
319
EP18/E |
287
LKMDKLTLKGMSYVMCTGSFKLEKEVA
313
EP17/E |
279FAGHLKCRLKMDKLTLKGMS
298
EP16/E |
|
326
YEGTDAPCKIPFSTQDEKGVTQNGRLIT353
EP21/E |
322
VQIKYEGTDAPCKIPFSTQDEKGVTQNG
349
EP20/E |
310
KEVAETQHGTVLVQIKYEGT
329
EP19/E |
|
| ||
|
356
PIVTDKEKPVNIEAEPPFGES
376
EP22/E |
356
PIVTDKEKPV
365
EP23/E |
NP |
|
380
IGVGEKA
386
EP25/E |
371
PPFGESYIVIGVGEKALKLSWFKKGSSIGKMF
402
EP24/E |
|
|
393
KKGSSIGKMFEATARGA409
EP26/E | ||
|
| ||
|
417
DTAWDFGSIGGVFT
430
EP28/E |
425
IGGVFTSVGKLVHQIFGTAYG445
EP29/E |
416GDTAWDFGSIGGVFTSVGKL
435
EP27/E |
|
| ||
|
469
NSRSTSL
475
EP32/E |
454TMKIGIGVLLTWLGLNSRSTSLSMSCIAVGIITLY488
EP30/E |
459
IGVLLTWLGLNSRSTSLSM
478
EP31/E |
NP: no prediction in the relevant region; bold italics indicates sequences that overlap between the predicted epitopes by three different tools.