Table 5.
Nucleotide content and gene count levels of the genome of Butyricimonas phoceensis strain AT9
| Attribute | Genome (total) |
|
|---|---|---|
| Value | % of total | |
| Size (bp) | 4 736 949 | 100 |
| G+C content (bp) | 2 013 756 | 42.51 |
| Coding region (bp) | 4 330 163 | 91.40 |
| Total genes | 4007 | 100 |
| RNA genes | 60 | 1.50 |
| Protein-coding genes | 3947 | 98.50 |
| Genes with function prediction | 2386 | 60.45 |
| Genes assigned to COGs | 1880 | 47.63 |
| Genes with peptide signals | 1185 | 30.02 |
| Gene associated to PKS or NRPS | 10 | 0.25 |
| Genes associated to ORFan | 178 | 4.51 |
| Genes associated to mobilome | 1109 | 28.10 |
| Genes associated to toxin/antitoxin | 70 | 1.8 |
| Genes associated to resistance genes | 3 | 0.076 |
| Genes with paralogues (E value 1e-10) | 1449 | 36.71 |
| Genes with paralogues (E value 1e-25) | 1098 | 27.82 |
| Gene associated to hypothetical protein | 1316 | 33.34 |
| Genes larger than 5000 nucleotides | 5 | 0 |
COGs, Clusters of Orthologous Groups database; PKS, polyketide synthase; NRPS, nonribosomal peptide synthase.