Table 8.
Pairwise comparison of Butyricimonas phoceensis strain AT9 with other species using GGDC, formula 2 (DDH estimates based on identities/HSP length)a
| Strain AT9 | Odoribacter laneus | Bacteroides plebeius | Butyricimonas virosa | Paraprevotella clara | Parabacteroides merdae | Porphyromonas catoniae | Odoribacter splanchnicus | |
|---|---|---|---|---|---|---|---|---|
| Strain AT9 | 100% ± 0 | 17.7% ± 2.2 | 21.4% ± 2.3 | 80.2% ± 2.7 | 20.2% ± 2.3 | 19.1% ± 2.3 | 18.3% ± 2.3 | 17.3% ± 2.2 |
| O. laneus | 100% ± 0 | 19% ± 2.3 | 18.2% ± 2.3 | 20.5% ± 2.3 | 18.9% ± 2.3 | 19.6% ± 2.3 | 18.2% ± 2.3 | |
| B. plebeius | 100% ± 0 | 19.9% ± 2.3 | 20.3% ± 2.3 | 21.5% ± 2.3 | 17.6% ± 2.2 | 18.4% ± 2.3 | ||
| B. virosa | 100% ± 0 | 20.3% ± 2.3 | 19.4% ± 2.3 | 19.0% ± 2.3 | 17.4% ± 2.2 | |||
| P. clara | 100% ± 0 | 18.9% ± 2.3 | 17.8% ± 2.2 | 17.7% ± 2;2 | ||||
| P. merdae | 100% ± 0 | 17.6% ± 2.2 | 21.5% ± 2.3 | |||||
| P. catoniae | 100% ± 0 | 18% ± 2.2 | ||||||
| O. splanchnicus | 100% ± 0 |
DDH, DNA-DNA hybridization; GGDC, Genome-to-Genome Distance Calculator; HSP, high-scoring segment pairs.
a
Confidence intervals indicate inherent uncertainly in estimating DDH values from intergenomic distances based on models derived from empirical test data sets (which are always limited in size). These results are in accordance with 16S rRNA and phylogenomic analyses as well as GGDC results.