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. 2016 Aug 15;113(35):9798–9803. doi: 10.1073/pnas.1607845113

Table S1.

NMR and structure statistics

Protein or protein complex FliT FliTΔα4–FliDC FliTΔα4–FliIEN
Completeness of resonance assignments*
 Backbone, % 70 95 95
 Methyl groups, % 97 100 100
 Aromatic, % 100 100 97
Conformationally restricting restraints
 NOE 427 1243 1114
 Short, |ij| ≤ 1 148 490 373
 Medium range, 2 < |ij| < 5 154 429 327
 Long range, |ij| ≥ 5 125 324 414
 NOE restraints per residue 3.8 8.8 10.6
 Interchain NOEs n/a 166 169
  Hydrogen bond, long range, |ij| ≥ 5 138 (0) 212 (3) 180 (6)
  Dihedral angle 170 289 214
  Total restraints, long range, |ij| ≥ 5 735 (125) 1,744 (282) 1,508 (420)
  Restraints per residue, total/long range 6.5/1.1 12.4/2.3 14.4/4.0
Residual distance restraint violations
 Average restraint violations/structure
  0.1–0.2 Å 5.9 6.5 12.5
  0.2–0.5 Å 3.8 0.2 1.5
  >0.5 Å 0.0 0.0 0.0
 Average rms violation/restraint, Å 0.05 0.01 0.02
 Maximum distance violation, Å 0.43 0.34 0.34
Model quality
 Rmsd from average coordinates, Å
  All backbone atoms, ordered/all 0.5/1.9 0.5/0.5 0.5/1.2
  All heavy atoms, ordered/all 0.9/2.1 0.7/0.7 0.9/1.6
  Rmsd bond lengths, Å 0.05 0.019 0.019
  Rmsd bond angles, degrees 1.1 1.1 1.1
MolProbity Ramachandran plot§
 Most favored regions, 95.9% 94.3 95.9 97.5
 Additionally allowed regions, % 4.5 3.4 2.5
 Disallowed regions, % 0.1 0.6 0.0
Global quality scores (raw/Z-score)
 Verify3D 0.36/1.73 0.36/−1.61 0.33/−2.09
 ProsaII 0.20/1.18 0.80/0.62 0.77/0.50
 Procheck G-factor, ϕ/ψ§ 0.34/−1.93 0.29/1.46 0.42/1.97
 Procheck G-factor, all dihedrals§ 0.64/−0.04 0.11/0.65 0.21/1.24
 MolProbity clashscore 20.94/−2.07 17.74/−1.52 16.11/−1.24
Buried surface area in the complex
 Total/hydrophobic/polar, Å2 n/a 2,586.3/2,231.1/355.1 2,231.4/1,821.2/410.4
Solvation-free energy gain/interface specificity/shape complementarity factor#
 ΔiG, kcal/mol/P value/Sc n/a −32.8/0.028/0.718 −24.5/0.130/0.642

Structural statistics were computed for the ensemble of 20 deposited structures.

*

Computed for each protein/complex (residues): full-length FliT (1A–122A), FliT (1A–95A):FliD (428B–467B), and FliT (1A–95A):FliI (1B–25B). Observable resonances consistent with U-[2H,15N,13C] and selective CH3 and aromatic labeling are included: Cα, Cβ, C′ (backbone), Ala(β), Ile(δ1), Leu(δ1,2), Met(ε), Thr(γ2), Val(γ1,2) (methyls), and U-[1H,13C]-Phe,Tyr, and Trp (aromatic).

Calculated for protein using the PSVS 1.5 program (1). Average distance constraints were calculated using the sum of r−6.

Interchain contacts for FliT:FliD and FliT:FliI complexes.

§

Ordered residue ranges [S(ϕ) + S(ψ) > 1.8] for FliT (1–122): 2–55, 58–82, 98–115. Secondary structure elements: 2–26 (α1), 30–48 (α2), 58–83 (α3), and 97–111 (α4). Ordered residue ranges [S(ϕ) + S(ψ) > 1.8] for FliT (1A–95A):FliD (428B–467B): 1–50, 53–95 (chain A), 428–466 (chain B). Secondary structure elements (chain A): 2–27 (α1), 30–48 (α2), 58–94 (α3). Secondary structure elements (chain B): 428–466 (α1). Ordered residue ranges [S(ϕ) + S(ψ) > 1.8] for FliT (1A–95A):FliI (1B–25B): 2–93 (chain A), 1–23 (chain B). Secondary structure elements (chain A): 2–27 (α1), 31–48 (α2), 58–93 (α3). Secondary structure elements (chain B): 2–20 (α1).

Calculated with NACCESS 2.1.1.

#

Computed with ePISA 1.51 and CCP4 6.5.