Table 2.

Parameter values for simulated data sets

Parameter	Description	Simulation values
M	Number of SNPs	10, 50, 150, 500, 1500
C	Total read counts per SNP	10, 100, 1000, 10000
f	Inbreeding coefficient	0.01, 0.1, 0.5, 0.9, 0.99
$\mathit{\beta }$	Controls skew in allele frequency	1, 10, 100, 1000

For each parameter set, 100 replicate data sets were generated