Table 1.
Rhodobacter capsulatus ORFs Coregulated in Transcriptomic Comparisons.
| ORF | Genome Annotationb | Involvement in RcGTA Activity | Role |
|---|---|---|---|
| rcc00171a | CHP | Yes (this study) | Attachment |
| rcc00555 | HP | Yes (Hynes et al. 2012) | Release |
| rcc00556 | HP | Yes (Westbye et al. 2013) | Release |
| rcc01079a | CHP | Yes (this study; Westbye et al. 2016) | Adsorption |
| rcc01080a | CHP | Yes (this study; Westbye et al. 2016) | Adsorption |
| rcc01682 | CHP | ||
| rcc01683 | Terminase-like | Yes (Lang and Beatty 2000) | DNA packaging |
| rcc01684a | Portal, HK97 family | ||
| rcc01685 | CHP | No (Hynes et al. 2012) | Unknown |
| rcc01686 | Prohead protease, HK97 family | Yes (Lang and Beatty 2000) | Virion maturation |
| rcc01687a | Major capsid protein, HK97 family | Yes (Lang and Beatty 2000; Florizone 2006) | Structural protein |
| rcc01688a | Phage CHP | ||
| rcc01689a | Phage CHP | ||
| rcc01690a | CHP | ||
| rcc01691a | Major tail protein, TP901-1 family | ||
| rcc01692 | CHP | ||
| rcc01693 | Phage CHP | ||
| rcc01694a | Phage CHP | ||
| rcc01695 | Phage CHP | Yes (Lang and Beatty 2000) | Unknown |
| rcc01696a | Phage CHP | ||
| rcc01697 | Cell wall peptidase, NlpC/P60 family | Yes (Fogg et al. 2012) | DNA entry |
| rcc01698a | Phage CHP | Yes (Lang and Beatty 2000) | |
| rcc01865 | HP | Yes (this study) | Gene regulation |
| rcc01866 | HP | Yes (this study) | Virion maturation |
| rcc02623 | HP | No (this study) | |
| rcc02730 | HP | No (this study) |
aThe encoded protein was found associated with purified RcGTA particles for these ORFs (Chen et al. 2008).
bAs provided in the current GenBank records; CHP, conserved hypothetical protein; HP, hypothetical protein.