Table 1.
Broad Scale Comparison of Genome Features among the Four Gut Fungi (Harpellales).
| Taxa | Smittium culicis | Smittium culicis | Smittium mucronatum | Zancudomyces culisetae |
|---|---|---|---|---|
| Strain ID | GSMNP (ARSEF 9010) | ID-206-W2 | ALG-7-W6 (ARSEF 9090) | COL-18-3 (ARSEF 9012) |
| Coverage | 49× | 27× | 24× | 26× |
| Number of scaffolds (>1kb) | 6,137 | 7,749 | 7,797 | 1,954 |
| Genome size by scaffolds (Mb) | 77.12 | 71.05 | 102.35 | 28.70 |
| Repeats ratio | 3.34% | 3.64% | 2.94% | 4.29% |
| GC ratio | 28.61% | 29.46% | 26.05% | 35.52% |
| CEGMA complete (+incomplete) genes | 93.95% (97.98%) | 93.55% (97.58%) | 89.52% (93.55%) | 85.89% (92.74%) |
| Open reading frames | 16,101 | 15,575 | 11,486 | 9,667 |
| Protein-coding genes | 12,468 | 11,593 | 8,410 | 8,252 |
| Exons per gene | 2.26 | 2.20 | 2.28 | 1.78 |
| Gene density (genes per Mb) | 162 | 163 | 82 | 288 |
| Percentage of secreted proteins | 7.74% | 7.09% | 8.10% | 9.78% |
| Transmembrane helices | 5891 | 4912 | 4213 | 3214 |
| HGT (mapped to host genomes) | 59 (0) | 60 (0) | 27 (0) | 33 (5) |