Table 2.

Classification of INDELs on the Basis of their Homology with Class I (retrotransposons) or Class II (DNA transposons) Transposable Elements

		# DELa	% DELb (%)	# INSc	%INSd
Class I	LTR Gypsy	1,752	39.9	5,175	49.8
	LTR Copia	854	19.4	2,862	27.5
	LINE L1	64	1.5	365	3.5
	LTR	38	0.9	308	3.0
	SINE	6	0.1	2	0.0
	Total	2,714	61.8	8,712	83.8
Class II	TIR hAT	525	12.0	449	4.3
	Helitron	380	8.7	255	2.5
	TIR CACTA	343	7.8	481	4.6
	TIR PIF/Harbinger	39	0.9	93	0.9
	TIR Mutator	26	0.6	0	0.0
	Class II unknown	365	8.3	410	3.9
	Total	1,678	38.2	1,688	16.2
Unclassified		3,497	44.3	186	1.8

^aNumber of classified deletions.

^bPercentage of classified deletions.

^cNumber of classified insertions.

^dPercentage of classified insertions.