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. 2016 Sep 16;11(9):e0162981. doi: 10.1371/journal.pone.0162981

Table 1. Bacterial strains and plasmids used in the study of the cht locus.

Strains or plasmid Characteristics Reference
Strains
JIR325 RifR NalR derivative of C. perfringens strain 13 [29]
JIR12755 JIR325 ΔchtDchtE Ω cat(P) This study
JIR12773 JIR12755 Δcat(P) Ω ermBchtD+chtE+ This study
JIR12614 JIR325 srt::erm(B) This study
JIR12861 JIR12614 (pJIR4151) This study
Plasmids
pET28a(+) E. coli expression vector, N-terminal 6x His-tag, KanR Novagen
pJIR750 E. coli-C. perfringens shuttle vector, CmR [30]
pJIR751 E. coli-C. perfringens shuttle vector, EmR [30]
pJIR2715 Suicide vector base for C. perfringens, EmR [31]
pJIR2783 Suicide vector base for C. perfringens, CmR, ErmR [32]
pJIR3562 Targetron vector base for C. perfringens, CmR, ErmR [33]
pJIR3566 Targetron vector base for C. perfringens, lacZ’, CmR, ErmR [33]
pJIR3924 pCR-BluntII-TOPO carrying 2.1 kb chtE downstream sequence, KanR This study
pJIR3926 pCR-BluntII-TOPO carrying 2 kb chtD upstream sequence, KanR This study
pJIR3928 pJIR2783 with 2 kb BamHI-PstI chtD upstream fragment, CmR, EmR This study
pJIR3929 pJIR3928 with 2.1 kb SacI-XhoI chtE downstream fragment, CmR, EmR This study
pJIR4029 pJIR751 with 5.3 kb Asp718-SphI chtD to 650 bp of chtA fragment, EmR This study
pJIR4032 pJIR3926 with 1.4 kb PstI-NotI erm(Q) cassette of pJIR2715, KanR This study
pJIR4038 pJIR3566 carrying 353 bp BamHI/HindIII fragment targeted to srt, lacZ’, CmR, ErmR This study
pJIR4053 pCR-BluntII-TOPO carrying 5.4 kb SacI-PvuI chtD to 650 bp of chtA fragment from pJIR4029, KanR This study
pJIR4055 pJIR4053 with 3.5 kb SacI isdA upstream sequence and erm(Q) cassette of pJIR4032, KanR This study
pJIR4151 pJIR750 with 5.2 kb Asp718-SphI chtD to chtA gene fragment, CmR This study
pJIR4080 Expression vector, pET28a(+) with 2 kb NheI-XhoI chtD gene fragment, KanR This study
pJIR4075 Expression vector, pET28a(+) with 486 bp NdeI-BamHI chtE gene fragment, KanR This study
pJIR4077 Expression vector, pET28a(+) with 477 bp NdeI-BamHI srt gene fragment, KanR This study