TABLE 1.
Accession numbers and metadata for the genomes of 17 Salmonella serovar Heidelberg isolates sequenced in this study
| GenBank accession no. | Local reference ID | Pair ID, sourcea | AMR profile (resistance genes in plasmids according to ResFinder 2.0) | PFGE profile (XbaI/BlnI) | Phage type |
|---|---|---|---|---|---|
| CP016565 | AMR588-04-00318 | A, chicken feces | AcAmCeCfCxSt (blaCMY-2) | SHEXAI.0001/SHEBNI.0001 | 29 |
| CP016569 | AMR588-04-00320 | A, chicken feces | AcAmCeCfCxSt (blaCMY-2) | SHEXAI.0001/SHEBNI.0001 | 29 |
| CP016573 | AMR588-04-00435 | B, chicken feces | Susceptible | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016576 | AMR588-04-00437 | B, chicken feces | Susceptible | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016507 | SH12-003 | C, human | Susceptible | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016504 | SH12-007 | C, human | Susceptible | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016579 | SH13-006 | D, human | Susceptible | SHEXAI.0001/SHEBNI.0001 | 26 |
| CP016586 | SH13-004 | D, human | Susceptible | SHEXAI.0001/SHEBNI.0001 | 26 |
| CP016510 | SH14-028 | E, food | Susceptible | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016581 | SH14-009 | E, human | GeSt [aac(3)-VIa, aadA1] | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016561 | A3ES40 | F, food | Susceptible | SHEXAI.0001/SHEBNI.0001 | 26 |
| CP016563 | A3EZ223 | F, human | Susceptible | SHEXAI.0001/SHEBNI.0001 | 26 |
| CP016525 | 09-036813-1A | NA, equine clinical | AmChGeKaSuTm [strB, strA, aac(6′)-IIc, aph(3′)-Ia, blaTEM-1B, QnrB49, ere(A), sul1, dfrA18] | SHEXAI.0014/SHEBNI.0210 | 29 |
| CP016514 | 11-004736-1-7 | NA, bovine clinical | AcAmCeCfCx (blaCMY-2) | SHEXAI.0001/SHEBNI.0001 | 29 |
| CP016530 | SA01AB09084001 | NA, chicken cecal contents | AcAmCeCfCx (blaCMY-2) | SHEXAI.0001/SHEBNI.0001 | 19 |
| CP016521 | SA02DT09004001 | NA, chicken meat | AcAmCeCfCx (blaCMY-2) | SHEXAI.0001/SHEBNI.0001 | 9 |
| CP016517 | CE-R2-11-0435 | NA, chicken meat | Am (blaTEM-1B) | SHEXAI.0001/SHEBNI.0001 | 20 |
a
Six pairs (A to F) of related strains are shown in paired rows and are from broiler chicken feces collected in 2013 (pairs A and B) and from foodborne illness outbreaks that occurred in 2012 (pair C), 2013 (pair D), 2014 (pair E), and 2003 (pair F). NA, not applicable.