Table 1. Results of PCR survey to identify gfap and vim sequences in the genomes of representative amphibian and other vertebrate species.
See Supplementary Fig. S16 for detailed phylogenetic analysis used to confirm the vim (column 8) and gfap (column 11) sequences identified in PCR survey.
Common Name | Species | Class | Order | Family | vim Clones Sequenced | Successful Reads | vim | gfap Clones Sequenced | Successful Reads | gfap |
---|---|---|---|---|---|---|---|---|---|---|
Common Toad | Bufo bufo | Amphibia | Anura | Bufonidae | 13 | 13 | 6 | 12 | 11 | 0 |
African clawed frog | Xenopus laevis | Amphibia | Anura | Pipidae | 3 | 3 | 3 | 26 | 24 | 0 |
Carvalho’s Surinam toad | Pipa carvalhoi | Amphibia | Anura | Pipidae | 7 | 7 | 6 | 13 | 12 | 0 |
Mexican burrowing frog | Rhinophrynus dorsalis | Amphibia | Anura | Rhinophrynidae | 7 | 7 | 7 | 12 | 12 | 0 |
Iberian painted frog | Discoglossus galganoi | Amphibia | Anura | Discoglossidae | 8 | 7 | 7 | 11 | 11 | 0 |
Archey’s frog | Leiopelma archeyi | Amphibia | Anura | Leiopelmatidae | 24 | 13 | 9 | 12 | 12 | 0 |
Gold striped salamander | Chioglossa lusitanica | Amphibia | Caudata | Salamandridae | 12 | 10 | 7 | 25 | 12 | 11 |
Japanese giant salamander | Andrias japonicus | Amphibia | Caudata | Cryptobranchidae | 7 | 7 | 7 | 7 | 7 | 7 |
Tiny cayenne caecilian | Microcaecilia unicolor | Amphibia | Gymnophiona | Siphonopidae | 7 | 6 | 6 | 23 | 22 | 0 |
Koa Tao Island caecilian | Ichthyophis kohtaoensis | Amphibia | Gymnophiona | Ichthyophiidae | 7 | 7 | 7 | 8 | 7 | 0 |
Two-lined caecilian | Rhinatrema bivittatum | Amphibia | Gymnophiona | Rhinatre matidae | 11 | 9 | 6 | 8 | 8 | 8 |
Mouse | Mus musculus | Mammalia | Rodentia | Muridae | 3 | 3 | 3 | 6 | 6 | 6 |
Viviparous lizard | Zootoca vivipara | Sauropsida | Squamata | Lacertidae | 12 | 9 | 7 | 7 | 6 | 6 |
West African lungfish | Protopterus annectens | Sarcopterygii | Lepidosireniformes | Protopteidae | 13 | 13 | 0 | 9 | 7 | 7 |
Zebra fish | Daniorerio | Actinopterygii | Cypriniformes | Cyprinidae | 3 | 3 | 2 | 3 | 3 | 3 |
Marbled bichir | Polypterus palmas | Actinopterygii | Polypteriformes | Polypteridae | 7 | 6 | 6 | 11 | 10 | 7 |