Table S1.
Extended assembly metrics for draft mealybug genomes
| Assembly metric | MHIR | FVIR | PCIT (reassembly) | PLON | TPER | PMAR |
| Total assembly size (bp) | 163,044,544 | 304,570,832 | 377,829,872 | 284,990,201 | 237,582,518 | 191,208,351 |
| Total no. of scaffolds | 12,889 | 32,723 | 167,514 | 66,857 | 80,386 | 60,102 |
| No. of scaffolds ≥1,000 bp | 8,043 | 21,984 | 64,930 | 40,284 | 58,090 | 33,617 |
| Largest scaffold (bp) | 393,850 | 322,873 | 82,122 | 182,788 | 54,847 | 76,575 |
| N50 | N75 | 47,025 | 22,300 | 25,562 | 12,551 | 7,078 | 3,639 | 10,126 | 4,908 | 4,681 | 2,689 | 6,799 | 3,788 |
| G + C (%) | 35.3 | 34.2 | 34.3 | 33.7 | 31.5 | 36.1 |
| No. of Ns per 100 kbp | 97.8 | 20.7 | 152.6 | 26.2 | 8.8 | 34.1 |
| CEGMA complete (of 248) | 239 (96.37%) | 239 (96.37%) | 236 (95.16%) | 229 (92.34%) | 236 (95.16%) | 242 (97.58%) |
| CEGMA complete plus partial | 246 (99.19%) | 243 (97.98%) | 245 (98.79%) | 244 (98.39%) | 247 (99.60%) | 245 (98.79%) |
| BUSCOs Eukaryota (n=429) | C:85% [D:7.4%], F:3.0%, M:11% | C:84% [D:5.1%], F:3.9%, M:11% | C:80% [D:6.9%], F:7.2%, M:11% | C:78% [D:3.4%], F:9.0%, M:12% | C:77% [D:4.1%], F:10%, M:12% | C:82% [D:5.8%], F:5.5%, M:11% |
| BUSCOs Arthropoda (n=2,675) | C:76% [D:3.5%], F:14%, M:9.4% | C:76% [D:3.3%], F:13%, M:9.9% | C:71% [D:4.8%], F:16%, M:12% | C:70% [D:2.3%], F:16%, M:13% | C:66% [D:2.3%], F:16%, M:16% | C:72% [D:3.0%], F:15%, M:12% |
All values were calculated without endosymbiont and low-coverage contamination contigs. BUSCOs Arthropoda assessments for Acyrthosiphon pisum genome assembly as a reference: C:72% [D:6.1%], F:15%, M:12%. C, complete; D, duplicated; F, fragmented; M, missing.