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. 2016 Jun 6;44(16):7935–7943. doi: 10.1093/nar/gkw516

Table 1. Modification of HCV RNA IRES by alkylating derivatives of complementary oligodeoxyribonucleotides.

DNA derivative Relative modification extent Cross-linking site in HCV IRES
with DNA helper
DNA1-NHCH2RCl 0.1 0.5 C83 (N3)
DNA2-NHCH2RCl 0.2 0.6 A73 (N1)

Sequence of DNA derivative and complementary region in HCV IRES are pTAGACGCTTTCTGCGTGAAGA (61–81) for DNA1-NHCH2RCl and pTCTGCGTGAAGACAGTAG (55-72) for DNA2-NHCH2RCl.