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. Author manuscript; available in PMC: 2017 Oct 1.
Published in final edited form as: Neurobiol Learn Mem. 2016 Jul 20;134(Pt B):221–235. doi: 10.1016/j.nlm.2016.07.018

Table 1.

List of bins showing differential expression after fear conditioning. Each differential bin contains the chromosome, start position, and end position for easy reference.

GeneID Gene name Bin
#
Chr Start Stop Strand logFC t P value FDR
ENSMUSG00000007617 Homer1 018 chr13 94136356 94137083 + 2.0 14.1 1.4E–33 3.7E–28
ENSMUSG00000029657 Hsph1 012 chr5 150423259 150426039 1.1 10.3 2.4E–21 3.3E–16
ENSMUSG00000039801 2410089E03Rik 053 chr15 8201065 8202148 + −1.1 −9.2 9.6E–19 8.6E–14
ENSMUSG00000031167 Rbm3 002 chrX 7716104 7717909 1.0 9.0 3.5E–17 2.3E–12
ENSMUSG00000007617 Homer1 017 chr13 94136233 94136355 + 1.9 8.4 3.5E–15 1.9E–10
ENSMUSG00000020431 Adcy1 024 chr11 7072883 7078509 + −0.4 −8.4 5.5E–15 2.4E–10
ENSMUSG00000025372 Baiap2 027 chr11 119867673 119868096 + 0.5 7.7 3.5E–13 1.3E–08
ENSMUSG00000034083 C130022K22Rik 009 chr6 91835401 91838063 + 1.0 7.8 4.5E–13 1.5E–08
ENSMUSG00000008153 Clstn3 004 chr6 124383426 124383521 1.2 7.4 1.5E–12 4.5E–08
ENSMUSG00000043872 Zmym1 001 chr4 126724338 126724885 1.1 7.3 6.6E–12 1.8E–07
ENSMUSG00000005089 Slc1a2 036 chr2 102621901 102630941 + −0.3 −6.7 8.4E–11 2.0E–06
ENSMUSG00000020287 Mpg 010 chr11 32130054 32131244 + −0.6 −7.1 1.5E–10 3.3E–06
ENSMUSG00000024576 Csnk1a1 028 chr18 61745286 61746152 + 0.6 6.5 4.2E–10 8.5E–06
ENSMUSG00000063077 Kif1b 001 chr4 148550428 148552126 −0.2 −6.3 7.6E–10 1.5E–05
ENSMUSG00000035206 3110056O03Rik 016 chr10 80329406 80330144 + 0.4 6.5 9.0E–10 1.6E–05
ENSMUSG00000059495 Arhgef12 002 chr9 42771926 42776264 −0.3 −6.3 1.0E–09 1.7E–05
ENSMUSG00000022710 Usp7 020 chr16 8697013 8697568 0.8 6.2 1.4E–09 2.1E–05
ENSMUSG00000025372 Baiap2 026 chr11 119864352 119864399 + 0.6 6.3 1.6E–09 2.4E–05
ENSMUSG00000024576 Csnk1a1 027 chr18 61744853 61745285 + 0.6 6.2 2.3E–09 3.2E–05
ENSMUSG00000063077 Kif1b 002 chr4 148552127 148552971 −0.3 −6.0 4.0E–09 5.3E–05
ENSMUSG00000041879 Ipo9 036 chr1 137302594 137303043 −0.7 −5.9 5.5E–09 7.0E–05
ENSMUSG00000057421 Las1l 015 chrX 93143543 93144773 −0.9 −6.0 6.0E–09 7.3E–05
ENSMUSG00000034656 Cacna1a 068 chr8 87163334 87163334 + 1.4 5.9 7.4E–09 8.6E–05
ENSMUSG00000031878 Nae1 015 chr8 107042164 107043101 1.1 5.9 8.2E–09 9.1E–05
ENSMUSG00000023033 Scn8a 030 chr15 100869972 100876360 + −0.2 −5.9 9.3E–09 1.0E–04
ENSMUSG00000075876 + ENSMUSG00000064791
 + ENSMUSG00000075924
 + ENSMUSG00000015656
Snord14c/
Snord14e/
Snord14d/Hspa8
038 chr9 40612831 40612920 + 1.4 5.9 9.7E–09 1.0E–04
ENSMUSG00000027523 Gnas 027 chr2 174155788 174155935 + 1.0 5.8 1.0E–08 1.0E–04
ENSMUSG00000071984 Fndc1 001 chr17 7931434 7932195 0.4 5.8 2.0E–08 1.9E–04
ENSMUSG00000038383 Pigu 004 chr2 155104386 155108131 0.5 5.8 2.6E–08 2.4E–04
ENSMUSG00000028053 Ash1l 002 chr3 88785155 88789712 + 0.4 5.7 3.0E–08 2.6E–04
ENSMUSG00000028826 Tmem57 002 chr4 134360480 134362431 −0.4 −5.7 3.9E–08 3.4E–04
ENSMUSG00000075876 + ENSMUSG00000064791
 + ENSMUSG00000075924
 + ENSMUSG00000015656
Snord14c/
Snord14e/
Snord14d/Hspa8
037 chr9 40612779 40612830 + 1.4 5.6 4.3E–08 3.6E–04
ENSMUSG00000024576 Csnk1a1 025 chr18 61742498 61744058 + 0.5 5.6 4.5E–08 3.7E–04
ENSMUSG00000023952 Gtpbp2 035 chr17 46303816 46303936 + 0.9 5.6 4.6E–08 3.7E–04
ENSMUSG00000007617 Homer1 016 chr13 94136198 94136232 + 2.1 5.6 5.4E–08 4.1E–04
ENSMUSG00000027429 Sec23b 030 chr2 144405140 144406851 + 0.9 5.5 6.4E–08 4.8E–04
ENSMUSG00000036052 Dnajb5 011 chr4 42963816 42965965 + 0.4 5.7 6.8E–08 4.9E–04
ENSMUSG00000013033 Lphn1 001 chr8 86424004 86424471 + 0.7 5.5 8.0E–08 5.6E–04
ENSMUSG00000035640 Dos 014 chr10 79598293 79598333 1.6 5.5 8.3E–08 5.7E–04
ENSMUSG00000028488 Sh3gl2 016 chr4 85033579 85035284 + 0.2 5.5 1.1E–07 7.5E–04
ENSMUSG00000027569 1600027N09Rik 010 chr2 180318228 180319110 + 0.4 5.5 1.5E–07 9.7E–04
ENSMUSG00000008153 Clstn3 005 chr6 124386790 124386835 1.4 5.3 2.1E–07 1.3E–03
ENSMUSG00000014873 Surf2 009 chr2 26773052 26774384 + 0.3 5.4 2.3E–07 1.5E–03
ENSMUSG00000063160 + ENSMUSG00000003762 Numbl/Adck4 037 chr7 28047272 28049894 + 0.4 5.2 2.9E–07 1.8E–03
ENSMUSG00000024777 Ppp2r5b 006 chr19 6230276 6230385 0.5 5.3 3.1E–07 1.8E–03
ENSMUSG00000031167 Rbm3 022 chrX 7721600 7721698 −0.6 −5.2 3.1E–07 1.8E–03
ENSMUSG00000053580 Tanc2 043 chr11 105786047 105790613 + −0.3 −5.2 3.3E–07 1.9E–03
ENSMUSG00000028161 Ppp3ca 030 chr3 136598842 136598864 + 0.7 5.2 3.5E–07 1.9E–03
ENSMUSG00000029765 Plxna4 001 chr6 32094565 32095925 −0.3 −5.2 3.7E–07 2.0E–03
ENSMUSG00000075003 + ENSMUSG00000037876 Jmjd1c/Jmjd1c 041 chr10 66707622 66708166 + 0.7 5.1 4.2E–07 2.3E–03
ENSMUSG00000027799 Nbea 062 chr3 55986894 55987623 0.6 5.1 4.4E–07 2.3E–03
ENSMUSG00000023952 Gtpbp2 031 chr17 46302947 46303259 + 0.4 5.1 5.3E–07 2.7E–03
ENSMUSG00000042605 Atxn2 051 chr5 122261639 122261939 + 0.6 5.1 5.6E–07 2.8E–03
ENSMUSG00000003269 Cyth2 023 chr7 53068527 53069248 0.4 5.1 5.9E–07 2.9E–03
ENSMUSG00000022451 Twf1 001 chr15 94408382 94410096 0.2 5.2 6.1E–07 3.0E–03
ENSMUSG00000072647 + ENSMUSG00000029454 Adam1a/
Mapkapk5
002 chr5 121968622 121969392 0.4 5.1 6.9E–07 3.3E–03
ENSMUSG00000038664 Herc1 095 chr9 66348328 66348982 + −0.6 −5.0 7.3E–07 3.4E–03
ENSMUSG00000030082 Sec61a1 014 chr6 88463896 88464200 0.8 5.1 7.6E–07 3.5E–03
ENSMUSG00000032855 Pkd1 017 chr17 24709563 24711715 + 0.5 5.0 8.4E–07 3.8E–03
ENSMUSG00000040929 Rfx3 001 chr19 27836211 27840930 −0.3 −5.0 9.7E–07 4.3E–03
ENSMUSG00000038762 Abcf1 037 chr17 36105913 36106178 1.4 4.9 1.3E–06 5.6E–03
ENSMUSG00000023952 Gtpbp2 044 chr17 46304840 46304970 + 0.4 4.9 1.3E–06 5.7E–03
ENSMUSG00000006676 Usp19 027 chr9 108403525 108404028 + 0.2 5.0 1.4E–06 5.8E–03
ENSMUSG00000078789 + ENSMUSG00000038268 Dph1/Ovca2 001 chr11 74989444 74991144 0.3 5.0 1.4E–06 5.8E–03
ENSMUSG00000040896 Kcnd3 009 chr3 105468465 105469879 + 1.0 5.0 1.4E–06 5.9E–03
ENSMUSG00000030207 8430419L09Rik 017 chr6 135182873 135183273 + −0.5 −4.9 1.7E–06 6.9E–03
ENSMUSG00000029587 Zfp12 004 chr5 143997458 143997932 + 1.0 5.0 1.7E–06 6.9E–03
ENSMUSG00000021097 Clmn 001 chr12 106001324 106010173 −0.2 −5.0 1.8E–06 7.0E–03
ENSMUSG00000015536 Mocs2 015 chr13 115615731 115616365 + 0.6 4.9 2.0E–06 7.8E–03
ENSMUSG00000045482 Trrap 027 chr5 145557830 145558030 + 0.9 4.8 2.0E–06 7.8E–03
ENSMUSG00000085832 D430036J16Rik 004 chr9 81530442 81530544 + −1.8 −5.1 2.1E–06 7.8E–03
ENSMUSG00000020612 Prkar1a 011 chr11 109522664 109523067 + 0.4 4.9 2.2E–06 8.2E–03
ENSMUSG00000053470 Kdm3a 017 chr6 71558999 71559041 2.5 4.8 2.6E–06 9.3E–03
ENSMUSG00000042042 Csgalnact2 007 chr6 118074432 118076139 1.2 4.9 2.8E–06 1.0E–02
ENSMUSG00000004070 Hmox2 004 chr16 4756845 4756902 + 1.1 4.9 2.8E–06 1.0E–02
ENSMUSG00000040479 Dgkz 011 chr2 91774090 91774212 0.5 4.7 3.1E–06 1.1E–02
ENSMUSG00000021327 Zkscan3 009 chr13 21481162 21485100 0.3 4.8 3.1E–06 1.1E–02
ENSMUSG00000055491 Pprc1 039 chr19 46146825 46147038 + 0.9 4.7 3.4E–06 1.2E–02
ENSMUSG00000074247 Dda1 013 chr8 73996515 73996681 + 0.7 4.8 3.6E–06 1.2E–02
ENSMUSG00000020654 Adcy3 032 chr12 4210892 4211481 + 0.5 4.7 3.6E–06 1.2E–02
ENSMUSG00000022565 + ENSMUSG00000063268 Plec/Parp10 003 chr15 76001406 6005809 −0.2 −4.7 3.7E–06 1.2E–02
ENSMUSG00000062296 Trank1 011 chr9 111267179 111270052 + 0.4 4.8 3.9E–06 1.3E–02
ENSMUSG00000057897 Camk2b 049 chr11 5965662 5965745 1.3 4.7 4.0E–06 1.3E–02
ENSMUSG00000050357 Rltpr 040 chr8 108219675 108220760 + 0.4 4.7 4.2E–06 1.3E–02
ENSMUSG00000000416 Cttnbp2 029 chr6 18381940 18383819 0.4 4.7 4.2E–06 1.3E–02
ENSMUSG00000028161 Ppp3ca 029 chr3 136598744 136598841 + 0.6 4.7 4.4E–06 1.4E–02
ENSMUSG00000024826 Dpf2 011 chr19 5902769 5903332 0.4 4.7 4.4E–06 1.4E–02
ENSMUSG00000034171 Faah 014 chr4 115672694 115673391 0.3 4.7 4.6E–06 1.4E–02
ENSMUSG00000015869 Prpsap1 009 chr11 116338662 116339053 0.5 4.7 4.8E–06 1.4E–02
ENSMUSG00000053483 Usp21 037 chr1 173215746 173216480 0.4 4.6 4.8E–06 1.4E–02
ENSMUSG00000004947 Dtx2 015 chr5 136495428 136497624 + 0.9 4.7 5.0E–06 1.5E–02
ENSMUSG00000025155 Dus1l 009 chr11 120651195 120651761 0.4 4.6 5.1E–06 1.5E–02
ENSMUSG00000006920 Ezh1 022 chr11 101068968 101069435 1.2 4.6 5.3E–06 1.5E–02
ENSMUSG00000004110 Cacna1e 001 chr1 156239649 156246065 −0.3 −4.6 5.5E–06 1.5E–02
ENSMUSG00000019254 Ppp1r12c 052 chr7 4453132 4453266 0.9 4.6 5.6E–06 1.5E–02
ENSMUSG00000068221 + ENSMUSG00000022436 Pdxp/Sh3bp1 031 chr15 78744349 78744961 + 0.3 4.6 5.6E–06 1.5E–02
ENSMUSG00000063077 Kif1b 004 chr4 148552981 148554344 −0.2 −4.6 5.6E–06 1.5E–02
ENSMUSG00000074247 Dda1 012 chr8 73996275 73996514 + 0.7 4.7 5.7E–06 1.5E–02
ENSMUSG00000024012 Mtch1 030 chr17 29484705 29484849 0.7 4.6 5.7E–06 1.5E–02
ENSMUSG00000053141 Ptprt 001 chr2 161347726 161352092 −0.3 −4.6 5.7E–06 1.5E–02
ENSMUSG00000039838 Slc45a1 002 chr4 150004156 150005026 0.4 4.8 5.7E–06 1.5E–02
ENSMUSG00000000441 Raf1 007 chr6 115570346 115571833 0.2 4.6 5.7E–06 1.5E–02
ENSMUSG00000054263 Lifr 025 chr15 7141744 7147489 + −0.3 −4.6 5.9E–06 1.5E–02
ENSMUSG00000063160 + ENSMUSG00000003762 Numbl/Adck4 035 chr7 28046397 28047186 + 0.5 4.6 6.1E–06 1.6E–02
ENSMUSG00000038406 Scaf1 010 chr7 52266722 52267492 0.7 4.6 6.5E–06 1.6E–02
ENSMUSG00000020978 Klhdc2 002 chr12 70397709 70397741 + 0.8 4.6 6.8E–06 1.7E–02
ENSMUSG00000019877 Serinc1 001 chr10 57235580 57237098 0.1 4.6 7.3E–06 1.8E–02
ENSMUSG00000069045 Ddx3y 001 chrY 597158 599810 0.3 4.6 7.4E–06 1.8E–02
ENSMUSG00000027893 Ahcyl1 007 chr3 107468310 107468433 0.8 4.6 7.4E–06 1.8E–02
ENSMUSG00000021830 Txndc16 017 chr14 45787030 45787898 1.7 4.5 7.5E–06 1.8E–02
ENSMUSG00000042726 Trafd1 010 chr5 121825256 121825804 −0.4 −4.5 8.4E–06 2.0E–02
ENSMUSG00000052593 Adam17 007 chr12 21333841 21333900 2.5 4.5 9.0E–06 2.1E–02
ENSMUSG00000022199 Slc22a17 005 chr14 55526468 55526722 0.4 4.6 9.2E–06 2.2E–02
ENSMUSG00000060216 Arrb2 011 chr11 70249075 70249498 + 0.7 4.5 9.4E–06 2.2E–02
ENSMUSG00000027185 Nat10 027 chr2 103574683 103575022 0.8 4.5 9.4E–06 2.2E–02
ENSMUSG00000002280 Narfl 018 chr17 25917898 25918137 + −0.5 −4.5 9.4E–06 2.2E–02
ENSMUSG00000032540 Abhd5 002 chr9 122260848 122260957 + −0.9 −4.7 9.8E–06 2.2E–02
ENSMUSG00000047342 Zfp286 003 chr11 62591891 62593106 0.4 4.5 9.9E–06 2.2E–02
ENSMUSG00000038324 Trpc4ap 013 chr2 155464719 155465208 0.5 4.5 1.0E–05 2.3E–02
ENSMUSG00000063659 Zfp238 002 chr1 179375952 179377219 + 0.4 5.1 1.0E–05 2.3E–02
ENSMUSG00000034739 + ENSMUSG00000079592 Mfrp/C1qtnf5 030 chr9 43915789 43916054 + −1.1 −4.5 1.0E–05 2.3E–02
ENSMUSG00000023087 Ccrn4l 003 chr3 51044128 51051726 + 0.5 4.7 1.1E–05 2.3E–02
ENSMUSG00000029765 Plxna4 002 chr6 32095926 32100584 −0.2 −4.5 1.1E–05 2.4E–02
ENSMUSG00000040225 Prrc2c 029 chr1 164640414 164640960 0.5 4.5 1.1E–05 2.4E–02
ENSMUSG00000034675 Dbn1 011 chr13 55577678 55577992 0.3 4.5 1.1E–05 2.4E–02
ENSMUSG00000028782 Bai2 046 chr4 129698499 129698806 + 0.3 4.4 1.3E–05 2.7E–02
ENSMUSG00000039953 Clstn1 001 chr4 148960577 148960746 + 1.2 4.5 1.3E–05 2.7E–02
ENSMUSG00000061751 Kalrn 052 chr16 34152121 34152180 0.4 4.4 1.4E–05 2.9E–02
ENSMUSG00000033059 Pygb 019 chr2 150649343 150649711 + 0.9 4.4 1.4E–05 2.9E–02
ENSMUSG00000035847 Ids 002 chrX 67596247 67599848 0.2 4.5 1.4E–05 2.9E–02
ENSMUSG00000030603 Psmc4 021 chr7 28834222 28834719 0.5 4.5 1.4E–05 2.9E–02
ENSMUSG00000021196 Pfkp 021 chr13 6594283 6595229 0.6 4.4 1.5E–05 3.0E–02
ENSMUSG00000040479 Dgkz 010 chr2 91774000 91774089 0.5 4.4 1.5E–05 3.1E–02
ENSMUSG00000029713 + ENSMUSG00000029711 Gnb2/Epo 041 chr5 137972128 137972202 0.4 4.4 1.6E–05 3.1E–02
ENSMUSG00000048148 Nwd1 031 chr8 75235492 75238645 + −0.3 −4.4 1.6E–05 3.1E–02
ENSMUSG00000022514 Il1rap 028 chr16 26728315 26730203 + −0.3 −4.4 1.7E–05 3.3E–02
ENSMUSG00000044783 Hjurp 023 chr1 90171673 90173793 0.5 4.4 1.7E–05 3.3E–02
ENSMUSG00000045482 Trrap 013 chr5 145545127 145545215 + 1.3 4.3 1.7E–05 3.3E–02
ENSMUSG00000005378 Wbscr22 030 chr5 135537215 135537339 0.9 4.4 1.7E–05 3.3E–02
ENSMUSG00000084896 + ENSMUSG00000020883 Gm11632/Fbxl20 014 chr11 97956818 97958242 −0.6 −4.4 1.7E–05 3.3E–02
ENSMUSG00000052423 B4galt3 014 chr1 173201505 173201770 + −0.8 −4.4 1.8E–05 3.4E–02
ENSMUSG00000031878 Nae1 009 chr8 107040890 107040949 1.0 4.3 1.8E–05 3.4E–02
ENSMUSG00000037996 Slc24a2 002 chr4 86629033 86637076 −0.2 −4.4 1.9E–05 3.5E–02
ENSMUSG00000028703 Lrrc41 005 chr4 115751487 115751587 + 1.1 4.4 1.9E–05 3.5E–02
ENSMUSG00000060206 Zfp462 005 chr4 55021187 55024237 + 0.4 4.4 1.9E–05 3.6E–02
ENSMUSG00000037017 Zscan21 015 chr5 138575442 138575442 + 2.3 4.4 2.0E–05 3.6E–02
ENSMUSG00000020716 Nf1 029 chr11 79258526 79258648 + 1.2 4.3 2.0E–05 3.6E–02
ENSMUSG00000031389 + ENSMUSG00000031388
 + ENSMUSG00000031391
Arhgap4/Naa10/
L1cam
132 chrX 71163408 71164840 0.4 4.3 2.1E–05 3.7E–02
ENSMUSG00000032589 Bsn 010 chr9 108012745 108018857 0.4 4.4 2.1E–05 3.7E–02
ENSMUSG00000091471 + ENSMUSG00000025204
 + ENSMUSG00000051984
Gm20538/Ndufb8/
Sec31b
015 chr19 44599966 44600144 −2.8 −4.3 2.1E–05 3.7E–02
ENSMUSG00000020894 Vamp2 013 chr11 68903553 68903678 + 0.5 4.4 2.1E–05 3.8E–02
ENSMUSG00000001763 Tspan33 001 chr6 29644222 29644233 + 1.9 4.4 2.3E–05 4.0E–02
ENSMUSG00000026596 Abl2 018 chr1 158572848 158579699 + −0.3 −4.4 2.3E–05 4.0E–02
ENSMUSG00000050875 A730017C20Rik 012 chr18 59232072 59234318 + −0.6 −4.4 2.3E–05 4.0E–02
ENSMUSG00000030082 Sec61a1 012 chr6 88462600 88463804 0.5 4.3 2.4E–05 4.2E–02
ENSMUSG00000040447 Spns2 007 chr11 72266618 72267055 0.5 4.3 2.4E–05 4.2E–02
ENSMUSG00000048078 Odz4 055 chr7 104057065 104059603 + −0.2 −4.3 2.5E–05 4.2E–02
ENSMUSG00000057236 Rbbp4 016 chr4 129002068 129005831 0.4 4.3 2.5E–05 4.2E–02
ENSMUSG00000044308 Ubr3 054 chr2 69858185 69858507 + −0.5 −4.3 2.5E–05 4.2E–02
ENSMUSG00000040209 Zfp704 001 chr3 9427011 9438898 −0.4 −4.4 2.6E–05 4.3E–02
ENSMUSG00000023026 Dip2b 023 chr15 100011740 100011867 + 0.6 4.2 2.8E–05 4.6E–02
ENSMUSG00000056602 Fry 027 chr5 151198318 151198442 + 0.5 4.2 2.8E–05 4.7E–02
ENSMUSG00000051306 Usp42 023 chr5 144483224 144483814 1.8 4.3 2.9E–05 4.7E–02
ENSMUSG00000035027 Map2k2 009 chr10 80581357 80581721 + −0.9 −4.3 2.9E–05 4.7E–02
ENSMUSG00000007850 Hnrnph1 046 chr11 50199824 50199891 + 0.6 4.2 2.9E–05 4.7E–02
ENSMUSG00000029578 Wipi2 016 chr5 143140444 143140598 + 0.7 4.3 3.0E–05 4.8E–02
ENSMUSG00000027797 Dclk1 009 chr3 55270495 55275239 + 0.3 4.3 3.0E–05 4.8E–02
ENSMUSG00000028943 Espn 001 chr4 151494440 151494444 0.8 4.2 3.0E–05 4.8E–02
ENSMUSG00000042625 Safb2 026 chr17 56708446 56708857 0.4 4.2 3.1E–05 4.8E–02
ENSMUSG00000058624 Gda 010 chr19 21493215 21493863 1.6 4.3 3.1E–05 4.9E–02