Table 1. PCR and pyrosecquencing primer.
NR3C1 SNPs | Forward Primer | Reverse Primer | Pyrosequencing Primer | TA PCR | Amplicon lenght |
---|---|---|---|---|---|
ER23/23EK | Bio 5’-GAAGAAAACCCCAGCAGTGTG -3’ | 5’-GACGCAGAAACCTTCACAGTAGCT -3’ | 5’-GGTTTTATAGAAGTCCATCA-3’ | 61°C | 98bp |
N363S | 5’- ACAGCAGGATCAGAAGCCTATTT -3’ | Bio 5’-AGTTCAGAGTCCCCAGAGAAGTC -3’ | 5’- CCGTTGGTTCCGAAA -3’ | 57°C | 119bp |
BclI | 5’- AGGTCTTGCTCACAGGGTTCTTG -3’ | Bio 5’- GAACTTGCAGGAACATTTGAACG -3’ | 5’- AAGTAGACAAGTTATGTCTG -3’ | 58°C | 128bp |
Bio: the 5’ biotin modification of the PCR primer is required for the DNA single strand DNA capture in the Pyrosequencing assay protocol.
TA: annealing temperature for Polimerase Chain Reaction