Table 2.

Targets of the known miRNAs identified in MT and WT.

miRNA/Target gene	Category	Cleavage position	P-value	Fragment abundance	Alignment score	RPM		Prob.	log2(MT/WT)	Target annotation
						WT	MT
csi-miR156k						16.63	0.01	1.00	−10.70
Cs2g23550	0	934	0.01	27	3					SPL4
Cs7g10830	0	1183	0	15	1					SPL2
Cs7g10990	0	1547	0	15	2					SPL12
Cs7g11770	0	1488	0	12	1.5					SPL6
csi-miR159						25.11	55.64	0.99	1.15
Cs1g03470	0	108	0	22	2					GAMYB
Cs1g06080	2	589	0.03	3	2.5					NOZZLE
Cs3g06390	0	773	0	58	2.5					GAMYB
Cs8g05120	0	205	0	32	3					Polygalacturonase inhibitor 1
csi-miR166d						1.45	3.12	0.87	1.10
Cs1g15640	0	1781	0	94	2.5					ATHB15
Cs2g09770	1	1069	0	10	2.5					ATHB14
Cs4g19310	0	677	0	189	2.5					ATHB8
Cs6g14050	2	454	0.03	7	3					IAA-amino acid hydrolase ILR1-like 1
Cs8g16510	0	1434	0	211	2.5					REVOLUTA
csi-miR172h-5p						2.43	0.01	1.00	−7.92
Cs6g14320	0	902	0.04	32	4					Abhydrolase domain-containing protein 11
csi-miR394						0.35	1.72	0.98	2.31
Cs7g10850	0	1168	0	85	1					F-box family protein
csi-miR399e						0.72	2.72	0.99	1.91
Cs2g06030	2	1077	0.03	13	3					UBC24
csi-miR5227						0.01	6.27	1.00	9.29
Cs3g22200	0	55	0.02	8	3					50S ribosomal protein L18
csi-miR530b						1.63	0.79	0.86	−1.05
Cs9g08500	0	1784	0	20	1.5					Hypothetical protein VITISV_041073
orange1.1t02948	2	2768	0.04	5	2.5					PWD
csi-miR535						8.01	17.85	0.96	1.16
Cs6g07930	0	1353	0	17	2.5					Serine/Threonine-protein kinase HT1