Skip to main content
. 2016 Sep 22;6:33697. doi: 10.1038/srep33697

Table 5. Bioinformatics analysis of high throughput sequencing data from selection rounds.

  Initial library HeLa-CCR7 cell-SELEX HeLa-CD2 cell-SELEX
Round 3 Round 5 Round 6 Round 7 Round 3 Round 5 Round 6 Round 7
Total Reads 40,174,712 57,383,383 49,925,077 57,778,216 51,453,049 15,346,437 16,615,193 18,644,363 21,236,560
Usable reads 37,951,292 54,654,814 45,474,572 51,503,799 44,593,424 13,682,508 14,585,023 16,629,267 19,596,020
% Usable 94.47% 95.25% 91.09% 89.14% 86.67% 89.16% 87.78% 89.19% 92.27%
Total reads of top 1000 unique sequences 3,169 5,797 226,559 564,840 771,042 326,175 6,766,517 9,237,787 16,182,954
Frequencies of top 1000 in all the usable reads 0.008% 0.011% 0.498% 1.097% 1.729% 2.384% 46.394% 55.551% 82.583%
Molecular enrichment (fold) (top 1000) 1.00 1.83 71.49 178.24 243.31 102.93 2135.22 2915.05 5106.64

The total reads and useful reads were defined. The most frequent 1,000 unique sequences and their percent in all the usable reads were identified. The molecular enrichment at each round was calculated by the formula: total reads of top 1000 unique sequences at round X/unselected round (initial library).