Table 1.
Summary characteristics of 16 individuals from four Mimulus taxa sampled for the targeted genome re‐sequencing analysis
| Expected | ||||||||
|---|---|---|---|---|---|---|---|---|
| genomic | Percentage | Mean | Fraction | |||||
| Sample ID | Population | Location | Latitude | Longitude | composition | of mapped | depth | heterozygous |
| M. guttatus (2x) | ||||||||
| gut‐1 | DBL | Dunblane, Scotland | 56.187 | −3.965 | GG | 94.5 | 65 | 0.018 |
| gut‐2 | AYR | Ayr, Scotland | 55.461 | −4.625 | GG | 94.3 | 74 | 0.019 |
| gut‐3 | CER | Cerrigydrudion, Wales | 53.006 | −3.549 | GG | 94 | 83 | 0.021 |
| gut‐4 | HOU | Houghton Lodge, England | 51.097 | −1.508 | GG | 93.8 | 111 | 0.018 |
| M. luteus (4x) | ||||||||
| lut‐1 | COL | Coldstream, Scotland | 55.655 | −2.240 | LLLL | 88.2 | 90 | 0.047 |
| lut‐2 | EY | El Yeso, Chile | −33.4 | −70.0 | LLLL | 87.9 | 96 | 0.044 |
| lut‐3 | EVI | Evie, Orkney, Scotland | 59.112 | −3.108 | LLLL | 88.6 | 74 | 0.051 |
| lut‐4 | RC | Río Cipreses, Chile | −34.2 | −70.3 | LLLL | 87.5 | 90 | 0.045 |
| M. x robertsii (3x) | ||||||||
| rob‐1 | TOR | Tormiston, Orkney, Scotland | 58.996 | −3.183 | GLL | 89.3 | 112 | 0.067 |
| rob‐2 | LED | Leadhills, Scotland | 55.424 | −3.735 | GLL | 90.1 | 98 | 0.065 |
| rob‐3 | NEN | Nenthall, England | 54.806 | −2.376 | GLL | 89.8 | 106 | 0.066 |
| rob‐4 | GON | Glen Gonnar, Scotland | 55.467 | −3.738 | GLL | 89.7 | 102 | 0.066 |
| M. peregrinus (6x) | ||||||||
| per‐1 | LED | Leadhills, Scotland | 55.423 | −3.735 | GGLLLL | 88.9 | 90 | 0.064 |
| per‐2 | LED | Leadhills, Scotland | 55.424 | −3.735 | GGLLLL | 89.8 | 117 | 0.067 |
| per‐3 | STR | Stromness, Orkney, Scotland | 58.969 | −3.283 | GGLLLL | 90.8 | 82 | 0.064 |
| per‐4 | GON | Glen Gonnar, Scotland | 55.467 | 3.738 | GGLLLL | 90.3 | 109 | 0.067 |
Taxon names are followed by estimates of ploidy level obtained using flow cytometry and/or chromosome counts. For chromosome counts and details on taxon identification, see Vallejo‐Marín (2012). Latitude and Longitude are expressed in decimal degrees in the WGS84 coordinate system. Expected genomic composition indicates the number of haploid complements expected from each of the putative parental taxa: M. guttatus (G) and M. luteus (L). Percentage of mapped: percent of total number reads mapped; mean depth: average read depth of genotyped sites; fraction heterozygous: fraction of heterozygous sites. Values for number sites, mean depth, and fraction het, were calculated from sites genotyped in all 16 individuals when running GATK in polyploidy mode allowing up to four alternate alleles.