Table 1. Counts of sequencing reads per sample; P.al or P.ch indicate monoculture of each fungi, +VV indicates co-inoculation with V. vinifera.

1 and 2 indicate the biological repetitions.

Sample	Total Reads	Aligned to fungi		Aligned to plant
P.al1	41599502	40089907	96.4%	147433	0.4%
P.al2	40357223	38680466	95.8%	371056	0.9%
P.al+VV1	34904228	33545735	96.1%	654957	1.9%
P.al+VV2	34619821	33088304	95.6%	1111878	3.2%
P.ch1	37154800	35081026	94.4%	129653	0.3%
P.ch2	40226826	37992439	94.4%	150335	0.4%
P.ch+VV1	34393171	31572727	91.8%	630313	1.8%
P.ch+VV2	30764387	27518852	89.5%	320653	1.0%