Table 2. Bond lengths dependence on different density functional models for the structure (MeS)2[2Fe-2S](SMe)2.
State | Source (sym) | Fe–Fe | Fe–Sb | Sb–Sb | Fe–St | ref |
---|---|---|---|---|---|---|
Oxidized | BP86(D2h) | 2.77 | 2.23 | 3.50 | 2.36 | |
B3LYP(D2h) | 2.93 | 2.28 | 3.49 | 2.38 | ||
OPBE(D2h) | 2.79 | 2.23 | 3.48 | 2.36 | ||
BP86(D2) | 2.68 | 2.21 | 3.51 | 2.35 | ||
B3LYP(D2) | 2.83 | 2.26 | 3.53 | 2.37 | ||
OPBE(D2) | 2.71 | 2.21 | 3.49 | 2.35 | ||
X-ray: Pdx | 2.71/2.72 | 2.22 | 3.55 | 2.35 | Obs (a) | |
X-ray: S-o-xyl | 2.698 | 2.209 | 3.498 | 2.305 | Obs (b) | |
X-ray Plant ferredoxin | 2.72 | 2.01 | 3.54 | 2.23 | Obs (b) | |
Reduced | BP86(D2h) | 2.78 | 2.25 | 3.53 | 2.39 | |
B3LYP(D2h) | 3.01 | 2.26/2.39 | 3.55 | 2.48 | ||
OPBE(D2h) | 2.83 | 2.26 | 3.51 | 2.41 | ||
BP86(D2) | 2.75 | 2.21/2.27 | 3.54 | 2.43, 2.21/ | ||
2.27, 2.41 | ||||||
B3LYP(D2) | 2.95 | 2.24/2.40 | 3.58 | 2.47/2.49 | ||
OPBE(D2) | 2.78 | 2.20/2.90 | 3.52 | 2.44/2.40 | ||
X-ray: Pdx | 2.69/2.74 | 2.23 | 3.53 | 2.30 | Obs (a) |
The oxidized charge state [(Fe3+, s = 5/2):(Fe3+, s = −5/2)] with net multiplicity S = 1, where s is the spin on the particular Fe ion, (reduced) charge state [(Fe3+, s = 5/2): (Fe2+, s = −4/2)] with net multiplicity S = 2. Calculations of the spin state were carried out using Gaussian 09 combined with the GIFA method [6]. (a) Ref [49], (Pdx) Putidaredoxin with some mutations at non-ligand binding residues (b) Ref [50], (S-o-xyl) ([2Fe-2S](o-xylylenedithiolate)2 structure.