Table 1.
Peptides used in this study
Name | Sequence | Charge | Source | |
---|---|---|---|---|
UniProt | Position | |||
S2 | TRYWNPKMKPFIFGA | +3 | P0A7V0 | 20–34 |
S2-minus1 | GHQTRYWNPKMKPFI | +3 to +4 | 17–31 | |
S2-minus2 | VHFGHQTRYWNPKMK | +3 to +5 | 14–28 | |
S2-minus3 | KAGVHFGHQTRYWNP | +2 to +4 | 11–25 | |
S2-plus1 | WNPKMKPFIFGARNK | +4 | 23–37 | |
S2-plus2 | KMKPFIFGARNKVHI | +4 to +5 | 26–40 | |
S2-long2 | QTRYWNPKMKPFIFGAR | +4 | 19–35 | |
S2-long4 | HQTRYWNPKMKPFIFGARN | +4 to +5 | 18–36 | |
S2-long6 | GHQTRYWNPKMKPFIFGARNK | +5 to +6 | 17–37 | |
S2-long8 | FGHQTRYWNPKMKPFIFGARNKV | +5 to +6 | 16–38 | |
S2-short2 | RYWNPKMKPFIFG | +3 | 21–33 | |
S2-short4 | YWNPKMKPFIF | +2 | 22–32 | |
S2-short6 | WNPKMKPFI | +2 | 23–31 | |
S2-short8 | WNPKMKP | +2 | 23–29 | |
S3 | RLGIVKPWNSTWFAN | +2 | P0A7V3 | 11–25 |
T1 | VGSNSYPHKYNNYEG | 0 to +1 | P00651 | 59–73 |
SlpA linker | SGLVPRGS | +1 | - | - |
For peptides derived from the S2 protein, parts overlapping the original S2 peptide are underlined. The expected charges at neutral pH are listed. These were calculated using −1 for Glu and Asp, +1 for Lys and Arg, and 0 or +1 for His (for peptides with His residues, the charge is given as a range). In addition to the peptides listed here, we also used the following five mutants of the S2 peptide: P25A, P29E, P25A/P29E, P25N/P29N, and W23A