Table 4.
The avocado transcripts showing the greatest repression shared in all flooded to non-flooded comparisons at 22 and 48 h post-flooding
| Seq ID | Annotation | e-value | GO process |
|---|---|---|---|
| Transcripts common between 22 and 48 h in the 30 most highly repressed transcripts | |||
| Pa_Contig01489 | Aquaporin PIP2.1, putative [Ricinus communis] | 2.12E-78 | GO:0016021,GO:0016020,GO:0006810,GO:0005215 |
| Pa_Contig01574 | TIP protein [Solanum lycopersicum] | 9.83E-117 | GO:0072489,GO:0005215,GO:0042807,GO:0016021,GO:0016020,GO:0006810, GO:0009705,GO:0015200,GO:0009507 |
| Pa_NA_F_contig07500 | Unknown | ||
| Pa_Contig05105 | subtilisin-like protease [Nicotiana tabacum] | 3.25E-58 | GO:0006508,GO:0004252,GO:0008236,GO:0016787,GO:0043086,GO:0008233,GO:0042802 |
| Pa_Contig00100 | GDP-L-galactose phosphorylase [Actinidia eriantha] | 1.68E-163 | GO:0016779,GO:0016740,GO:0008152 |
| Pa_Contig06179 | dihydroflavonol 4-reductase [Epimedium sagittatum] | 6.45E-30 | GO:0044237,GO:0003824,GO:0050662 |
| Pa_Contig00967 | phenylalanine ammonia-lyase [Cinnamomum osmophloeum] | 3.33E-179 | GO:0009698,GO:0009058,GO:0016841,GO:0045548,GO:0005737,GO:0016829,GO:0003824,GO:0006559,GO:0009800 |
| Pa_Contig01429 | dihydroflavinol reductase [Dendrobium moniliforme] | 3.18E-63 | GO:0044237,GO:0003824,GO:0050662 |
| Pa_Contig04550 | 1,4-alpha-glucan-branching enzyme [Solanum tuberosum] | 1.18E-76 | GO:0016740,GO:0043169,GO:0009501,GO:0016757,GO:0005978,GO:0005975,GO:0003824, GO:0019252,GO:0004553,GO:0003844,GO:0009507,GO:0009536 |
| Pa_Contig07582 | PREDICTED: uncharacterized protein LOC100833771 [Brachypodium distachyon] | 1e-06 | |
| Transcripts present in all treatments present only at 22 h | |||
| Pa_Contig03065 | PREDICTED: protein GAST1-like [Malus domestica] | 6e-46 | |
| Pa_Contig07665 | chalcone synthase [Vitis vinifera] | 6.80E-11 | GO:0009753,GO:0009926,GO:0009058,GO:0016210,GO:0009611,GO:0005634,GO:0009813,GO:0006979, GO:0009705,GO:0031540,GO:0009629,GO:0009733,GO:0005783,GO:0010224,GO:0008152,GO:0003824, GO:0016747,GO:0016746,GO:0016740 |
| Pa_Contig03403 | Nucleobase ascorbate transporter [Medicago truncatula] | 5.44E-85 | GO:0009506,GO:0016020,GO:0055085,GO:0006810,GO:0005215 |
| Pa_Contig00312 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Vitis vinifera] | 2.29E-82 | GO:0009637,GO:0043565,GO:0042803,GO:0003700,GO:0003677,GO:0005634,GO:0045893,GO:0009737, GO:0009414,GO:0030308,GO:0009788,GO:0048573,GO:0006355,GO:0000976,GO:0048510,GO:0006351 |
| Pa_NA_RC_Contig07454 | Unknown | ||
| Pa_Sin_FZ03KKT01A7ZOH | PREDICTED: peroxidase 15-like [Solanum lycopersicum] | 8.70E-27 | GO:0046872,GO:0055114,GO:0020037,GO:0016491,GO:0006979,GO:0004601 |
| Pa_Contig00110 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] | 0 | GO:0003849,GO:0016829,GO:0009073 |
| Pa_Contig00619 | chalcone synthase [Actinidia chinensis] | 5.71E-167 | GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016747,GO:0016746 |
| Pa_Contig02129 | glutathione S-transferase [Gossypium hirsutum] | 2.54E-72 | GO:0016740,GO:0008152 |
| Pa_Contig00126 | trans-cinnamate 4-hydroxylase [Populus tremuloides] | 0 | GO:0046872,GO:0055114,GO:0016705,GO:0020037,GO:0016491,GO:0005506,GO:0004497 |
| Transcripts present in all treatments present only at 48 h | |||
| Pa_Contig01220 | aquaporin TIP1 [Quercus petraea] | 1.50E-111 | GO:0016021,GO:0016020,GO:0006810,GO:0005215 |
| Pa_Contig05744 | chalcone synthase [Persea americana] | 6.02E-60 | GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016746 |
| Pa_NA_F_contig06354 | Unknown | ||
| Pa_Contig04602 | starch branching enzyme [Phaseolus vulgaris] | 8.55E-51 | GO:0004553,GO:0005975,GO:0043169,GO:0003824 |
| Pa_Contig01208 | glutathione S-transferase [Salicornia brachiata] | 5.75E-79 | GO:0016740,GO:0008152 |
| Pa_Contig01583 | asparagine synthetase family protein [Populus trichocarpa] | 2.32E-102 | GO:0005524,GO:0070981,GO:0016874,GO:0006529,GO:0008152,GO:0000166,GO:0008652,GO:0004066 |
Transcripts were chosen and filtered based on whether they were in the top 30 most repressed transcripts within all treatments