Table 1.

Gene ontology analysis of all C1q modulated genes based on biological processes.

Biological Processes GO Term: All Genes	Number of genes in the gene set
	p<0.05		Overlap oxLDL/acLDL
	oxLDL	acLDL
Immune response	105⁎	98	39
Defense response	87⁎	88	38
Inflammatory response	56⁎	55	23
Response to wounding	66⁎	73	28
Positive regulation of immune system process	37⁎	37	15
Positive regulation of cell activation	22⁎	26	10
Regulation of transcription	–	324⁎	–
Anti-apoptosis	–	44⁎	–
RNA processing	53	88⁎	26
Programmed cell death	–	95⁎	–
Cell death	62	108⁎	37
Death	62	108⁎	37
Apoptosis	–	93⁎	–
Transcription	–	261⁎	–
tRNA metabolic process	17	28⁎	7
ncRNA metabolic process	28	44⁎	12
I-kappaB kinase/NF-kappaB cascade	10	19⁎	7
Positive regulation of protein kinase cascade	27	35⁎	12
Regulation of I-kappaB kinase/NF-kappaB cascade	19	26⁎	9
Regulation of programmed cell death	71	115⁎	32

^⁎FDR q<0.05.