Table 2.
Gene ontology analysis of all C1q upregulated genes based on biological processes.
| Biological processes GO term upregulated genes |
Number of genes in the gene set |
||
|---|---|---|---|
|
p<0.05 |
Overlap oxLDL/acLDL | ||
| oxLDL | acLDL | ||
| Anti-apoptosis | – | 27⁎ | – |
| Positive regulation of cellular biosynthetic process | 31 | 54⁎ | 21 |
| Regulation of transcription from RNA polymerase II promoter | 27 | 56⁎ | 18 |
| Positive regulation of biosynthetic process | 31 | 54⁎ | 21 |
| Intracellular signaling cascade | 52⁎ | 81⁎ | 31 |
| Positive regulation of nitrogen compound metabolic process | 28 | 50⁎ | 19 |
| Positive regulation of macromolecule biosynthetic process | 28 | 50⁎ | 20 |
| Apoptosis | – | 47⁎ | – |
| Programmed cell death | – | 47⁎ | – |
| Cell death | – | 52⁎ | – |
| Protein kinase cascade | 18 | 33⁎ | 13 |
| Regulation of transcription | – | 138⁎ | – |
| Positive regulation of transcription, DNA-dependent | 22 | 39⁎ | 15 |
| Death | – | 52⁎ | – |
| Positive regulation of RNA metabolic process | 22 | 39⁎ | 15 |
| Regulation of programmed cell death | – | 56⁎ | – |
| Positive regulation of NF-kappaB transcription factor activity | – | 10⁎ | – |
| Regulation of cell death | – | 56⁎ | – |
| I-kappaB kinase/NF-kappaB cascade | – | 12⁎ | – |
| Regulation of apoptosis | – | 55⁎ | – |
⁎
FDR q<0.05.