TABLE 2.
A. marginale subsp. centrale genotypes detected from South African bovine hosts (cattle, buffalo, and black wildebeest)
| Genotype | Country codea | Province codea | Yr | Animal no. | Sample clone ID | Host species | Origin, park, farm | Vaccine status | Size (bp) | No. of repeats | Short name |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ac1 Ac1 Ac1 Ac2 | IL | M | 2010 | Genome sequence | CP001759 | Cattle | Israel 2010 | + | 814 | 4 | Vaccine |
| Ac1 Ac1 Ac1 Ac2 | ZA | GP | 2014 | OBP vaccine | Cattle | OBP 2014b | + | 814 | 4 | Vaccine | |
| SANParks Biobanked samplesc | |||||||||||
| Ac11 Ac8 | ZA | EC | 2007 | CNP_986 | G | Buffalo | Cambedoo | − | 525 | 2 | |
| Ac9 Ac8 | ZA | EC | 2007 | CNP_986 | C | Buffalo | Cambedoo | − | 526 | 2 | |
| Ac11 Ac11 Ac11 Ac11 Ac8 | ZA | EC | 2007 | CNP_986 | C2 | Buffalo | Cambedoo | − | 940 | 5 | |
| Ac3 Ac4 Ac5 Ac6 | ZA | EC | 2007 | CNP_987 | J2 | Buffalo | Cambedoo | − | 823 | 3 | |
| Ac7 Ac8 | ZA | EC | 2007 | CNP_979 | D | Buffalo | Cambedoo | − | 526 | 2 | |
| Ac6 Ac35 Ac36T Ac37T Ac6 | ZA | NC | 2013 | MNP_999 | L | Buffalo | Mokala | − | 889 | 5 | |
| Ac38 Ac39T Ac34 Ac40T | ZA | NC | 2013 | MNP_999 | N | Buffalo | Mokala | − | 759 | 4 | |
| Ac38 Ac41T Ac42 Ac40T | ZA | NC | 2013 | MNP_1000 | A | Buffalo | Mokala | − | 733 | 4 | |
| Ac6Ac6 | ZA | NC | 2013 | MNP_1000 | G | Buffalo | Mokala | − | 790 | 2 | |
| Ac1 Ac1 Ac1 Ac2 | ZA | EC | 2013 | AEP_1003 | D | Buffalo | Addo | − | 814 | 4 | Vaccine |
| Ac7 Ac8 | ZA | EC | 2013 | AEP_1006 | D | Buffalo | Addo | − | 525 | 2 | |
| Ac38 Ac44T Ac43 | ZA | EC | 2013 | AEP_1006 | N | Buffalo | Addo | − | 628 | 3 | |
| Ac31 Ac8 | ZA | EC | 2013 | AEP_1006 | S | Buffalo | Addo | − | 526 | 2 | |
| Ac1 Ac1 Ac1 Ac1 | ZA | MP | 2008 | KNP_586 | A | Buffalo | Kruger | − | 814 | 4 | VV1 |
| Ac26 Ac26 Ac26 Ac2 | ZA | NC | 2011 | MNP_958 | F_w | Black wildebeest | Mokala | − | 862 | 4 | |
| Hluhluwe iMfolozi Park | |||||||||||
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2008 | HiP_6 | 1 | Buffalo | Hluhluwe | − | 815 | 4 | Vaccine |
| Ac30 Ac24 Ac25 | ZA | NL | 2008 | HiP_6 | A | Buffalo | Hluhluwe | − | 940 | 3 | |
| Ac29 Ac29 Ac29 | ZA | NL | 2008 | HiP_6 | B | Buffalo | Hluhluwe | − | 703 | 3 | |
| Ac33 Ac3 Ac6 | ZA | NL | 2008 | HiP_6 | L | Buffalo | Hluhluwe | − | 691 | 3 | |
| NZG Biobanked samplesc | |||||||||||
| Ac20 Ac32 Ac21 Ac10 | ZA | WC | 2011 | WC_107 | E | Cattle | WC | − | 700 | 4 | |
| Ac1 Ac1 Ac1 Ac2 | ZA | WC | 2011 | WC _108 | A | Cattle | WC | − | 799 | 4 | Vaccine |
| Ac12 Ac12 Ac13 Ac13 Ac14 | ZA | NL | 2011 | KZN_138 | B | Cattle | NL | − | 919 | 5 | |
| Ac12 Ac12 Ac13 Ac13Ac14 | ZA | NL | 2011 | KZN_132 | A | Cattle | NL | − | 941 | 4 | |
| Ac12 Ac12 Ac13 Ac13 Ac14 | ZA | NL | 2011 | KZN_130 | B | Cattle | NL | − | 980 | 5 | |
| Ac15 Ac16 Ac16 Ac16 | ZA | FS | 2011 | FS_56 | B | Cattle | FS | − | 821 | 4 | |
| Ac16 Ac16 Ac16 | ZA | FS | 2011 | FS_383 | B | Cattle | FS | − | 637 | 3 | |
| Farm 1 | Cattle | ||||||||||
| Ac33 Ac3 Ac6 | ZA | NL | 2015 | Berg 10 | A | Cattle | Bergville | + | 691 | 3 | |
| Ac19 Ac19 Ac3 Ac6 | ZA | NL | 2015 | Berg 10 | G | Cattle | Bergville | + | 814 | 4 | |
| Ac17 Ac18 Ac45 Ac46T Ac47 | ZA | NL | 2015 | Berg 10 | J | Cattle | Bergville | + | 922 | 5 | |
| Ac1 Ac1 Ac1 Ac22 | ZA | NL | 2015 | Berg 12 | B | Cattle | Bergville | + | 811 | 4 | VV3 |
| Ac20 Ac21 Ac21 Ac20 | ZA | NL | 2015 | Berg 12 | E | Cattle | Bergville | + | 937 | 5 | |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 12 | N | Cattle | Bergville | + | 814 | 4 | Vaccine |
| Ac23 Ac24 Ac25 Ac34 | ZA | NL | 2015 | Berg 19 | A | Cattle | Bergville | + | 940 | 5 | |
| Ac26 Ac12 Ac12 Ac27 Ac14 | ZA | NL | 2015 | Berg 19 | A_2 | Cattle | Bergville | + | 946 | 5 | |
| Ac1 Ac1 Ac1 Ac22 | ZA | NL | 2015 | Berg 19 | B | Cattle | Bergville | + | 811 | 4 | VV3 |
| Ac19 Ac3 Ac6 Ac6 | ZA | NL | 2015 | Berg 19 | I | Cattle | Bergville | + | 826 | 4 | |
| Farm 2 | |||||||||||
| Ac1 Ac1 Ac1 Ac22 | ZA | NL | 2015 | Berg 25 | A | Cattle | Bergville | + | 814 | 4 | VV3 |
| Ac1 | ZA | NL | 2015 | Berg 25 | E | Cattle | Bergville | + | 391 | 1 | |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 25 | B | Cattle | Bergville | + | 814 | 4 | Vaccine |
| Ac1 Ac1 Ac1 Ac1 | ZA | NL | 2015 | Berg 25 | E_2 | Cattle | Bergville | + | 814 | 4 | VV1 |
| Ac1 Ac1 Ac1 Ac2 Ac2 | ZA | NL | 2015 | Berg 25 | X | Cattle | Bergville | + | 914 | 5 | VV2 |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 27 | D | Cattle | Bergville | + | 814 | 4 | Vaccine |
| Ac1 Ac1 Ac1 Ac1 | ZA | NL | 2015 | Berg 27 | E | Cattle | Bergville | + | 956 | 5 | VV1 |
| Ac1 Ac1 Ac1 Ac2 Ac2 | ZA | NL | 2015 | Berg 27 | B | Cattle | Bergville | + | 955 | 5 | VV2 |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 17 | A | Cattle | Bergville | + | 943 | 5 | Vaccine |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 24 | A | Cattle | Bergville | + | 814 | 5 | Vaccine |
| Ac1 Ac1 Ac1 Ac2 Ac2 | ZA | NL | 2015 | Berg 24 | C | Cattle | Bergville | + | 955 | 5 | VV2 |
| Ac1 Ac28 Ac2 Ac28 | ZA | NL | 2015 | Berg 24 | V | Cattle | Bergville | + | 814 | 4 | |
| Ac1 Ac1 Ac1 Ac2 | ZA | NL | 2015 | Berg 30 | G | Cattle | Bergville | + | 811 | 4 | Vaccine |
| Ac1 Ac1 Ac1 Ac2 Ac2 | ZA | NL | 2015 | Berg 30 | I | Cattle | Bergville | + | 954 | 5 | VV2 |
| Ac1 Ac1 Ac1 Ac1 | ZA | NL | 2015 | Berg 20 | H3 | Cattle | Bergville | + | 814 | 4 | VV1 |
a
Country and province abbreviations follow ISO 3166-2.
b
OBP, Onderstepoort Biological Products (Pretoria, South Africa), which produces A. marginale subsp. centrale vaccine for sale.
c
SANParks, South African National Parks; NZG, National Zoological Gardens of South Africa Biobanks.