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. 2005 Oct 19;1:55–65. doi: 10.2142/biophysics.1.55

Table 2.

Numbers and ratios of loop region and secondary structure core containing predicted secondary structure breakers (a); and numbers and accuracy of predicted breakers in loop region, breaking region, and secondary structure core (b)

(a)

Regions Total number Number of regions with predicted breakers Ratio

  Loop region 8731 5774 0.66
    Breaking region 11314 5699 0.50
    Loop core 2425 1282 0.53
Secondary structure core 5657 626 0.11

(b)

P G A PGA Accuracy of prediction (%)

Total predicted breakers 3619 3937 1197 6841
  Loop region 3343 3578 1047 6110 89.3
    Breaking region 2622 2871 875 4960 72.5
    Loop core 721 707 172 1150 16.8
Secondary structure core 276 395 150 731 10.7