Table 1. Relative autocatalytic efficiency of the nine experimental nodes in isolated reactions.
Product | k1 (kuncat), M-1·s-1 | Km, μM | k6 (kcat), s-1 | k6/Km, M-1·s-1 | Krel* | Score† |
---|---|---|---|---|---|---|
T5 | 0.08 | 130 | 0.09 | 690 | 69 | 8.4 |
T2 | 0.10 | 320 | 0.09 | 280 | 22 | 6.9 |
T8 | 0.09 | 860 | 0.10 | 120 | 11 | 5.7 |
T3 | 0.09 | 990 | 0.08 | 80 | 7.1 | 4.8 |
T7 | 0.10 | 970 | 0.03 | 31 | 2.5 | 4.8 |
T6 | 0.13 | 1,000 | 0.04 | 40 | 2.5 | 4.5 |
T9 | 0.10 | 1,000 | 0.02 | 20 | 1.6 | 4.2 |
T1 | 0.08 | 970 | 0.01 | 10 | 1.0 | 3.0 |
T4 | <1‡ | 2.4 |
¶The kinetic parameters obtained from fitting the rates of product formation to template-assisted ligation reaction model (25) (see Fig. 12) using the program simfit (34).
Krel equal to the [(k6/Km)/k1] for each reaction divided by [(k6/Km)/k1] of the slowest measurable reaction (to make T1).
Values are in kcal/mol, calculated by using the scoring method described in the text for each homotrimer catalyst-product complex.
No intermediate species was detected.